Commit 93a52d77 authored by Armin Rauschenberger's avatar Armin Rauschenberger
Browse files

reference

parent f930960d
pkg <- "~/Desktop/joinet/package"
setwd(dir=pkg)
devtools::build(pkg=pkg)
devtools::check(pkg=pkg,quiet=FALSE,manual=TRUE)
rm(list=ls())#
#name <- "joinet"#
#
#load("D:/cornet/package/toydata.RData")#
pkg <- "~/Desktop/joinet/package"#
setwd(dir=pkg)#
#
devtools::as.package(x=pkg,create=FALSE)#
devtools::load_all(path=pkg)#
#usethis::use_data(toydata,overwrite=TRUE)#
devtools::document(pkg=pkg)#
#
unlink(file.path(pkg,c("vignettes/figure","docs")),recursive=TRUE)#
pkgdown::build_site(pkg=pkg)#
file.remove(file.path(pkg,c(".Rhistory","CRAN-RELEASE",".Rbuildignore",".DS_Store")))#
usethis::use_build_ignore(files=c("Readme.Rmd",".travis.yml","_pkgdown.yml","docs","cran-comments.md","appveyor.yml",".Rhistory",".DS_Store"))#
#usethis::use_build_ignore(files="^\\.git",escape=FALSE)#
#usethis::use_build_ignore(files="./.git")#
#usethis::use_build_ignore(c("^[.].*$","^.*/[.].*$"),escape=FALSE)#
#usethis::use_build_ignore("[.]git$",escape=FALSE)#
#
devtools::build(pkg=pkg)
devtools::check(pkg=pkg,quiet=FALSE,manual=TRUE)
usethis::use_build_ignore(".git")
devtools::check(pkg=pkg,quiet=FALSE,manual=TRUE)
system("getconf")
system("getconf DARWIN_USER_TEMP_DIR")
system("getconf DARWIN_USER_CACHE_DIR")
Package: joinet
Version: 0.0.9
Version: 0.0.10
Title: Multivariate Elastic Net Regression
Description: Implements high-dimensional multivariate regression by stacked generalisation (Wolpert 1992 <doi:10.1016/S0893-6080(05)80023-1>). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement. If required, install MRCE or remMap from GitHub (<https://github.com/cran/MRCE>, <https://github.com/cran/remMap>).
Description: Implements high-dimensional multivariate regression by stacked generalisation (Rauschenberger 2021 <doi:10.1093/bioinformatics/btab576>). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement. If required, install MRCE or remMap from GitHub (<https://github.com/cran/MRCE>, <https://github.com/cran/remMap>).
Depends: R (>= 3.0.0)
Imports: glmnet, palasso, cornet
Suggests: knitr, rmarkdown, testthat, MASS
......
## joinet 0.0.8 (2021-06-16)
* extension (with weights, without constraints)
## joinet 0.0.6 (2020-11-18)
* conditional execution
## joinet 0.0.5 (2020-10-02)
* updated documentation
## joinet 0.0.4 (2020-05-06)
* added competing models
## joinet 0.0.3 (2019-11-12)
* changed glmnet exports
## joinet 0.0.2 (2019-08-08)
* performance comparison
## joinet 0.0.1 (2019-08-03)
## joinet 0.0.10 (2021-08-05)
* udpated documentation
## joinet 0.0.8 (2021-06-16)
* extension (with weights, without constraints)
## joinet 0.0.6 (2020-11-18)
* conditional execution
## joinet 0.0.5 (2020-10-02)
* updated documentation
## joinet 0.0.4 (2020-05-06)
* added competing models
## joinet 0.0.3 (2019-11-12)
* changed glmnet exports
## joinet 0.0.2 (2019-08-08)
* performance comparison
## joinet 0.0.1 (2019-08-03)
* first submission
\ No newline at end of file
......@@ -70,7 +70,8 @@
#' @references
#' Armin Rauschenberger, Enrico Glaab (2021)
#' "Predicting correlated outcomes from molecular data"
#' \emph{Manuscript in preparation}.
#' \emph{Bioinformatics}. btab576
#' \url{https://doi.org/10.1093/bioinformatics/btab576}
#'
#' @details
#' \strong{input-output relations:}
......
---
pagetitle: joinet
output: github_document
editor_options:
chunk_output_type: console
---
<!-- Modify xxx.Rmd, not xxx.md! -->
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "README-"
)
```
[![Travis-CI Build Status](https://travis-ci.org/rauschenberger/joinet.svg)](https://travis-ci.org/rauschenberger/joinet)
[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/rauschenberger/joinet?svg=true)](https://ci.appveyor.com/project/rauschenberger/joinet)
[![Coverage Status](https://codecov.io/github/rauschenberger/joinet/coverage.svg?branch=master)](https://codecov.io/github/rauschenberger/joinet)
## Scope
Multivariate elastic net regression through stacked generalisation (extending the [R](https://cran.r-project.org) package [glmnet](https://CRAN.R-project.org/package=glmnet)).
## Installation
Install the current release from [CRAN](https://CRAN.R-project.org/package=joinet):
```{r,eval=FALSE}
install.packages("joinet")
```
or the latest development version from [GitHub](https://github.com/rauschenberger/joinet):
```{r,eval=FALSE}
#install.packages("devtools")
devtools::install_github("rauschenberger/joinet")
```
## Reference
Armin Rauschenberger and Enrico Glaab (2021). "Predicting correlated outcomes from molecular data". *Manuscript in preparation.*
[![CRAN version](https://www.r-pkg.org/badges/version/joinet)](https://CRAN.R-project.org/package=joinet)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/joinet)](https://CRAN.R-project.org/package=joinet)
[![Total CRAN downloads](https://cranlogs.r-pkg.org/badges/grand-total/joinet)](https://CRAN.R-project.org/package=joinet)
---
pagetitle: joinet
output: github_document
editor_options:
chunk_output_type: console
---
<!-- Modify xxx.Rmd, not xxx.md! -->
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "README-"
)
```
[![Travis-CI Build Status](https://travis-ci.org/rauschenberger/joinet.svg)](https://travis-ci.org/rauschenberger/joinet)
[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/rauschenberger/joinet?svg=true)](https://ci.appveyor.com/project/rauschenberger/joinet)
[![Coverage Status](https://codecov.io/github/rauschenberger/joinet/coverage.svg?branch=master)](https://codecov.io/github/rauschenberger/joinet)
## Scope
Multivariate elastic net regression through stacked generalisation (extending the [R](https://cran.r-project.org) package [glmnet](https://CRAN.R-project.org/package=glmnet)).
## Installation
Install the current release from [CRAN](https://CRAN.R-project.org/package=joinet):
```{r,eval=FALSE}
install.packages("joinet")
```
or the latest development version from [GitHub](https://github.com/rauschenberger/joinet):
```{r,eval=FALSE}
#install.packages("devtools")
devtools::install_github("rauschenberger/joinet")
```
## Reference
Armin Rauschenberger and Enrico Glaab (2021). "Predicting correlated outcomes from molecular data". *Bioinformatics* btab576. [doi: 10.1093/bioinformatics/btab576](https://doi.org/10.1093/bioinformatics/btab576).
[![CRAN version](https://www.r-pkg.org/badges/version/joinet)](https://CRAN.R-project.org/package=joinet)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/joinet)](https://CRAN.R-project.org/package=joinet)
[![Total CRAN downloads](https://cranlogs.r-pkg.org/badges/grand-total/joinet)](https://CRAN.R-project.org/package=joinet)
<!-- Modify xxx.Rmd, not xxx.md! -->
[![Travis-CI Build
Status](https://travis-ci.org/rauschenberger/joinet.svg)](https://travis-ci.org/rauschenberger/joinet)
[![AppVeyor build
status](https://ci.appveyor.com/api/projects/status/github/rauschenberger/joinet?svg=true)](https://ci.appveyor.com/project/rauschenberger/joinet)
[![Coverage
Status](https://codecov.io/github/rauschenberger/joinet/coverage.svg?branch=master)](https://codecov.io/github/rauschenberger/joinet)
## Scope
Multivariate elastic net regression through stacked generalisation
(extending the [R](https://cran.r-project.org) package
[glmnet](https://CRAN.R-project.org/package=glmnet)).
## Installation
Install the current release from
[CRAN](https://CRAN.R-project.org/package=joinet):
``` r
install.packages("joinet")
```
or the latest development version from
[GitHub](https://github.com/rauschenberger/joinet):
``` r
#install.packages("devtools")
devtools::install_github("rauschenberger/joinet")
```
## Reference
Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated
outcomes from molecular data”. *Manuscript in preparation.*
[![CRAN
version](https://www.r-pkg.org/badges/version/joinet)](https://CRAN.R-project.org/package=joinet)
[![CRAN RStudio mirror
downloads](https://cranlogs.r-pkg.org/badges/joinet)](https://CRAN.R-project.org/package=joinet)
[![Total CRAN
downloads](https://cranlogs.r-pkg.org/badges/grand-total/joinet)](https://CRAN.R-project.org/package=joinet)
<!-- Modify xxx.Rmd, not xxx.md! -->
[![Travis-CI Build
Status](https://travis-ci.org/rauschenberger/joinet.svg)](https://travis-ci.org/rauschenberger/joinet)
[![AppVeyor build
status](https://ci.appveyor.com/api/projects/status/github/rauschenberger/joinet?svg=true)](https://ci.appveyor.com/project/rauschenberger/joinet)
[![Coverage
Status](https://codecov.io/github/rauschenberger/joinet/coverage.svg?branch=master)](https://codecov.io/github/rauschenberger/joinet)
## Scope
Multivariate elastic net regression through stacked generalisation
(extending the [R](https://cran.r-project.org) package
[glmnet](https://CRAN.R-project.org/package=glmnet)).
## Installation
Install the current release from
[CRAN](https://CRAN.R-project.org/package=joinet):
``` r
install.packages("joinet")
```
or the latest development version from
[GitHub](https://github.com/rauschenberger/joinet):
``` r
#install.packages("devtools")
devtools::install_github("rauschenberger/joinet")
```
## Reference
Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated
outcomes from molecular data”. *Bioinformatics* btab576. [doi:
10.1093/bioinformatics/btab576](https://doi.org/10.1093/bioinformatics/btab576).
[![CRAN
version](https://www.r-pkg.org/badges/version/joinet)](https://CRAN.R-project.org/package=joinet)
[![CRAN RStudio mirror
downloads](https://cranlogs.r-pkg.org/badges/joinet)](https://CRAN.R-project.org/package=joinet)
[![Total CRAN
downloads](https://cranlogs.r-pkg.org/badges/grand-total/joinet)](https://CRAN.R-project.org/package=joinet)
reason for update: documentation
\ No newline at end of file
......@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -31,7 +31,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -89,11 +89,15 @@
<p>The <code>joinet</code> manuscript is in preparation. Click <a href="https://CRAN.R-project.org/package=joinet">here</a> for the R package.</p>
<p>Click <a href="https://academic.oup.com/bioinformatics/pdf-lookup/doi/10.1093/bioinformatics/btab576">here</a> to download article.</p>
<div>
<object data="https://academic.oup.com/bioinformatics/pdf-lookup/doi/10.1093/bioinformatics/btab576" type="application/pdf" width="100%" height="500px">
</object>
</div>
<div id="reference" class="section level2">
<h2 class="hasAnchor">
<a href="#reference" class="anchor"></a>Reference</h2>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Manuscript in preparation.</em></p>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Bioinformatics</em> btab576. <a href="https://doi.org/10.1093/bioinformatics/btab576">doi: 10.1093/bioinformatics/btab576</a>.</p>
</div>
</div>
......
......@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -31,7 +31,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -179,7 +179,7 @@
<div id="reference" class="section level2">
<h2 class="hasAnchor">
<a href="#reference" class="anchor"></a>Reference</h2>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Manuscript in preparation.</em></p>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Bioinformatics</em> btab576. <a href="https://doi.org/10.1093/bioinformatics/btab576">doi: 10.1093/bioinformatics/btab576</a>.</p>
</div>
</div>
......
......@@ -31,7 +31,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Authors • joinet</title>
<title>Citation and Authors • joinet</title>
<!-- jquery -->
......@@ -39,7 +39,7 @@
<meta property="og:title" content="Authors" />
<meta property="og:title" content="Citation and Authors" />
......@@ -58,7 +58,7 @@
</head>
<body data-spy="scroll" data-target="#toc">
<div class="container template-authors">
<div class="container template-citation-authors">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
......@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -118,6 +118,21 @@
<div class="row">
<div class="contents col-md-9">
<div class="page-header">
<h1>Citation</h1>
<small class="dont-index">Source: <a href='https://github.com/rauschenberger/joinet/blob/master/inst/CITATION'><code>inst/CITATION</code></a></small>
</div>
<p>Armin Rauschenberger and Enrico Glaab (2021). "Predicting correlated outcomes from molecular data", Bioinformatics, In press. https://doi.org/10.1093/bioinformatics/btab576</p>
<pre>@Article{,
title = {Predicting correlated outcomes from molecular data},
author = {Armin Rauschenberger and Enrico Glaab},
journal = {Bioinformatics},
volume = {In press},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab576},
}</pre>
<div class="page-header">
<h1>Authors</h1>
</div>
......
......@@ -12,7 +12,7 @@
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
<script src="pkgdown.js"></script><meta property="og:title" content="Multivariate Elastic Net Regression">
<meta property="og:description" content="Implements high-dimensional multivariate regression by stacked generalisation (Wolpert 1992 &lt;doi:10.1016/S0893-6080(05)80023-1&gt;). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement. If required, install MRCE or remMap from GitHub (&lt;https://github.com/cran/MRCE&gt;, &lt;https://github.com/cran/remMap&gt;).">
<meta property="og:description" content="Implements high-dimensional multivariate regression by stacked generalisation (Rauschenberger 2021 &lt;doi:10.1093/bioinformatics/btab576&gt;). For positively correlated outcomes, a single multivariate regression is typically more predictive than multiple univariate regressions. Includes functions for model fitting, extracting coefficients, outcome prediction, and performance measurement. If required, install MRCE or remMap from GitHub (&lt;https://github.com/cran/MRCE&gt;, &lt;https://github.com/cran/remMap&gt;).">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
......@@ -31,7 +31,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -99,7 +99,7 @@
<div id="reference" class="section level2">
<h2 class="hasAnchor">
<a href="#reference" class="anchor"></a>Reference</h2>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Manuscript in preparation.</em></p>
<p>Armin Rauschenberger and Enrico Glaab (2021). “Predicting correlated outcomes from molecular data”. <em>Bioinformatics</em> btab576. <a href="https://doi.org/10.1093/bioinformatics/btab576">doi: 10.1093/bioinformatics/btab576</a>.</p>
<p><a href="https://CRAN.R-project.org/package=joinet"><img src="https://www.r-pkg.org/badges/version/joinet" alt="CRAN version"></a> <a href="https://CRAN.R-project.org/package=joinet"><img src="https://cranlogs.r-pkg.org/badges/joinet" alt="CRAN RStudio mirror downloads"></a> <a href="https://CRAN.R-project.org/package=joinet"><img src="https://cranlogs.r-pkg.org/badges/grand-total/joinet" alt="Total CRAN downloads"></a></p>
</div>
......@@ -125,6 +125,12 @@
<li><a href="https://www.r-project.org/Licenses/GPL-3">GPL-3</a></li>
</ul>
</div>
<div class="citation">
<h2>Citation</h2>
<ul class="list-unstyled">
<li><a href="authors.html">Citing joinet</a></li>
</ul>
</div>
<div class="developers">
<h2>Developers</h2>
<ul class="list-unstyled">
......
......@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -123,6 +123,13 @@
<small>Source: <a href='https://github.com/rauschenberger/joinet/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="joinet-0010-2021-08-05" class="section level2">
<h2 class="hasAnchor">
<a href="#joinet-0010-2021-08-05" class="anchor"></a>joinet 0.0.10 (2021-08-05)</h2>
<ul>
<li>udpated documentation</li>
</ul>
</div>
<div id="joinet-008-2021-06-16" class="section level2">
<h2 class="hasAnchor">
<a href="#joinet-008-2021-06-16" class="anchor"></a>joinet 0.0.8 (2021-06-16)</h2>
......
......@@ -5,5 +5,5 @@ articles:
article: article.html
joinet: joinet.html
script: script.html
last_built: 2021-07-16T11:12Z
last_built: 2021-08-05T15:37Z
......@@ -74,7 +74,7 @@ the coefficients from the base learners.)" />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -72,7 +72,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -77,7 +77,7 @@ in high-dimensional settings." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -72,7 +72,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......@@ -260,7 +260,8 @@ ridge renders dense models (<code>alpha</code>\(=0\))</p>
<p>Armin Rauschenberger, Enrico Glaab (2021)
"Predicting correlated outcomes from molecular data"
<em>Manuscript in preparation</em>.</p>
<em>Bioinformatics</em>. btab576
<a href='https://doi.org/10.1093/bioinformatics/btab576'>https://doi.org/10.1093/bioinformatics/btab576</a></p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p><code><a href='cv.joinet.html'>cv.joinet</a></code>, vignette</p></div>
......
......@@ -72,7 +72,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
......@@ -73,7 +73,7 @@ i.e. the weights for the base learners." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">joinet</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.9</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.10</span>
</span>
</div>
......
citHeader("To cite joinet in publications use:")
citEntry(entry="Article",
title = "Predicting correlated outcomes from molecular data",
author = personList(as.person("Armin Rauschenberger"),as.person("Enrico Glaab")),
journal = "Bioinformatics",
volume= "In press",
year = 2021,
url = "https://doi.org/10.1093/bioinformatics/btab576",
textVersion = paste("Armin Rauschenberger and Enrico Glaab (2021).",
"\"Predicting correlated outcomes from molecular data\",",
"Bioinformatics, In press.",
"https://doi.org/10.1093/bioinformatics/btab576")
)
\ No newline at end of file
......@@ -131,7 +131,8 @@ browseVignettes("joinet") # further examples}
\references{
Armin Rauschenberger, Enrico Glaab (2021)
"Predicting correlated outcomes from molecular data"
\emph{Manuscript in preparation}.
\emph{Bioinformatics}. btab576
\url{https://doi.org/10.1093/bioinformatics/btab576}
}
\seealso{
\code{\link{cv.joinet}}, vignette
......
No preview for this file type
---
title: Multivariate Elastic Net Regression
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{article}
%\VignetteEncoding{UTF-8}
%\VignetteEngine{knitr::rmarkdown}
editor_options:
chunk_output_type: console
---
The `joinet` manuscript is in preparation. Click [here](https://CRAN.R-project.org/package=joinet) for the R package.