On the virtual machine, execute this chunk to obtain the BBMRI SNP data, the Geuvadis exon data, and the BBMRI exon data. Choose one out of the six biobanks (CODAM, LL, LLS, NTR, PAN, RS).
On the virtual machine, first restart R and then execute this chunk to test for alternative splicing. (It seems that lme4::lmer in spliceQTL::adjust.covariates fails to release memory on Linux.)