vignette

.Rhistory

-pkgs <- c("devtools","missRanger","mice","mvtnorm","glmnet","earth","spls","MTPS","RMTL","MultivariateRandomForest","mcen","remMap","SiER","GPM","MRCE","MLPUGS","benchmarkme")
-install.packages(pkgs)
-knitr::opts_chunk$set(echo=TRUE,eval=FALSE)
-setwd("C:/Users/armin.rauschenberger/Desktop/joinet")
-##############
-### joinet ###
-##############
-#--- generate toydata ----------------------------------------------------------
-set.seed(1)
-#toydata <- NULL
-#save(toydata,file=file.path("C:/Users/armin.rauschenberger/Desktop/package/cornet/data/toydata.R"))
-#--- compile package -----------------------------------------------------------
-rm(list=ls())
-name <- "joinet"
-#load("D:/cornet/package/toydata.RData")
-pkg <- "C:/Users/armin.rauschenberger/Desktop/joinet/joinet"
-setwd(dir=pkg)
-devtools::as.package(x=pkg,create=FALSE)
-devtools::load_all(path=pkg)
-#usethis::use_data(toydata,overwrite=TRUE)
-devtools::document(pkg=pkg)
-unlink(file.path(pkg,"vignettes","figure"),recursive=TRUE)
-setwd(dir=pkg)
-unlink(file.path(pkg,"docs"),recursive=TRUE)
-pkgdown::build_site(pkg=pkg)
-file.remove(file.path(pkg,".Rhistory"))
-#file.remove(file.path(pkg,c(".Rbuildignore",".Rhistory")))
-#usethis::use_build_ignore(files=c("Readme.Rmd",".travis.yml","_pkgdown.yml","docs","cran-comments.md","appveyor.yml",".Rhistory"))
-devtools::check(pkg=pkg,quiet=FALSE,manual=TRUE)
-devtools::install(pkg=pkg,upgrade=FALSE)
-#--- data simulation ---
-n <- 50; p <- 100; q <- 3
-X <- matrix(rnorm(n*p),nrow=n,ncol=p)
-Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
-# n samples, p inputs, q outputs
-#--- model fitting ---
-object <- joinet(Y=Y,X=X)
-# slot "base": univariate
-# slot "meta": multivariate
-#--- make predictions ---
-y_hat <- predict(object,newx=X)
-# n x q matrix "base": univariate
-# n x q matrix "meta": multivariate
-#--- extract coefficients ---
-coef <- coef(object)
-# effects of inputs on outputs
-# q vector "alpha": intercepts
-# p x q matrix "beta": slopes
-#--- model comparison ---
-loss <- cv.joinet(Y=Y,X=X)
-source('C:/Users/armin.rauschenberger/Desktop/joinet/joinet/R/pkgname.R')
-set.seed(1)
-#toydata <- NULL
-#save(toydata,file=file.path("C:/Users/armin.rauschenberger/Desktop/package/cornet/data/toydata.R"))
-#--- compile package -----------------------------------------------------------
-rm(list=ls())
-name <- "joinet"
-#load("D:/cornet/package/toydata.RData")
-pkg <- "C:/Users/armin.rauschenberger/Desktop/joinet/joinet"
-setwd(dir=pkg)
-devtools::as.package(x=pkg,create=FALSE)
-devtools::load_all(path=pkg)
-#usethis::use_data(toydata,overwrite=TRUE)
-devtools::document(pkg=pkg)
-unlink(file.path(pkg,"vignettes","figure"),recursive=TRUE)
-setwd(dir=pkg)
-unlink(file.path(pkg,"docs"),recursive=TRUE)
-pkgdown::build_site(pkg=pkg)
-file.remove(file.path(pkg,".Rhistory"))
-#file.remove(file.path(pkg,c(".Rbuildignore",".Rhistory")))
-#usethis::use_build_ignore(files=c("Readme.Rmd",".travis.yml","_pkgdown.yml","docs","cran-comments.md","appveyor.yml",".Rhistory"))
-devtools::check(pkg=pkg,quiet=FALSE,manual=TRUE)
-devtools::install(pkg=pkg,upgrade=FALSE)
-setwd(pkg)
-system("git remote set-url origin https://rauschenberger:Juncker1419@github.com/rauschenberger/joinet.git")
-system("git remote -v")
-system("git add --all")
-system("git commit -m \"vignette\"")
-system("git push origin master") # GitHub

_pkgdown.yml

@@ -20,6 +20,8 @@ navbar:
       href: articles/joinet.html
     - text: "article"
       href: articles/article.html
+    - text: "script"
+      href: articles/script.html
     - text: "news"
       href: news/index.html
   right:

docs/404.html

@@ -86,6 +86,9 @@
 <li>
   <a href="articles/article.html">article</a>
 </li>
+<li>
+  <a href="articles/script.html">script</a>
+</li>
 <li>
   <a href="news/index.html">news</a>
 </li>

docs/articles/article.html

@@ -46,6 +46,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/articles/index.html

@@ -86,6 +86,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>
@@ -128,6 +131,8 @@
         <dd></dt>
         <dt><a href="joinet.html">Multivariate Elastic Net Regression</a></dt>
         <dd></dt>
+        <dt><a href="script.html">Multivariate Elastic Net Regression</a></dt>
+        <dd></dt>
       </dl>
     </div>
   </div>

docs/articles/joinet.html

@@ -46,6 +46,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/authors.html

@@ -86,6 +86,9 @@
 <li>
   <a href="articles/article.html">article</a>
 </li>
+<li>
+  <a href="articles/script.html">script</a>
+</li>
 <li>
   <a href="news/index.html">news</a>
 </li>

docs/index.html

@@ -46,6 +46,9 @@
 <li>
   <a href="articles/article.html">article</a>
 </li>
+<li>
+  <a href="articles/script.html">script</a>
+</li>
 <li>
   <a href="news/index.html">news</a>
 </li>

docs/news/index.html

@@ -86,6 +86,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/pkgdown.yml

@@ -4,5 +4,6 @@ pkgdown_sha: ~
 articles:
   article: article.html
   joinet: joinet.html
-last_built: 2020-11-23T12:29Z
+  script: script.html
+last_built: 2020-12-01T08:42Z
 

docs/reference/coef.joinet.html

@@ -89,6 +89,9 @@ the coefficients from the base learners.)" />
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/reference/cv.joinet.html

@@ -87,6 +87,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/reference/index.html

@@ -86,6 +86,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/reference/joinet-package.html

@@ -92,6 +92,9 @@ in high-dimensional settings." />
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/reference/joinet.html

@@ -87,6 +87,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>

docs/reference/predict.joinet.html

@@ -87,6 +87,9 @@
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
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 </li>

docs/reference/weights.joinet.html

@@ -88,6 +88,9 @@ i.e. the weights for the base learners." />
 <li>
   <a href="../articles/article.html">article</a>
 </li>
+<li>
+  <a href="../articles/script.html">script</a>
+</li>
 <li>
   <a href="../news/index.html">news</a>
 </li>