test.multiple.html 6.21 KB
 Rauschenberger committed Jun 15, 2018 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112  Conduct multiple tests — test.multiple • spliceQTL

This function ...

test.multiple(Y, X, map, rho = c(0, 0.5, 1))

Arguments

Y

exon expression: matrix with $$n$$ rows (samples) and $$p$$ columns (exons)

X

SNP genotype: matrix with $$n$$ rows (samples) and $$q$$ columns (SNPs)

map

list with names "genes", "exons", and "snps" (output from map.genes, map.exons, and map.snps)

rho

correlation: numeric vector with values between $$0$$ and $$1$$

Details

Automatic adjustment of the number of permutations such that Bonferroni-significant p-values are possible.

Examples

NA
#> [1] NA