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<title>Get SNP data (Geuvadis) — get.snps.geuvadis • spliceQTL</title>

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    <h1>Get SNP data (Geuvadis)</h1>
    <small class="dont-index">Source: <a href='https://github.com/rauschenberger/spliceQTL/blob/master/R/functions.R'><code>R/functions.R</code></a></small>
    <div class="hidden name"><code>get.snps.geuvadis.Rd</code></div>
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    <div class="ref-description">
    
    <p>This function transforms SNP data (local machine).</p>
    
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    <pre class="usage"><span class='fu'>get.snps.geuvadis</span>(<span class='no'>chr</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>path</span> <span class='kw'>=</span> <span class='fu'>getwd</span>())</pre>
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    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>chr</th>
      <td><p>chromosome: integer \(1-22\)</p></td>
    </tr>
    <tr>
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      <th>data</th>
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      <td><p>local directory for VCF (variant call format) and SDRF (sample and data relationship format) files</p></td>
    </tr>
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    <tr>
      <th>path</th>
      <td><p>local directory for output</p></td>
    </tr>
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    </table>
    

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><div class='input'><span class='no'>path</span> <span class='kw'>&lt;-</span> <span class='st'>"C:/Users/a.rauschenbe/Desktop/spliceQTL/data"</span></div></pre>
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    <h2>Contents</h2>
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      <li><a href="#arguments">Arguments</a></li>
            
      <li><a href="#examples">Examples</a></li>
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