Commit 5efd5dbf authored by Anna Buschart's avatar Anna Buschart
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edit README

parent 1e6b007f
This repository contains code used in the multiomic analyses of faecal microbiota from four families with several cases of T1DM ( __MuSt__ ).
to build a search data base for [proteomics](proteomics-data-base.md) from predicted proteins and their variants:
⋅⋅* rename4proteomics.pl
⋅⋅* trypsinStartEnd.pl
⋅⋅* variant_annotateRepairedTab.pl
⋅⋅* variants_annotateTab4Stats.pl
⋅⋅* variants_locateType.pl
* rename4proteomics.pl
* trypsinStartEnd.pl
* variant_annotateRepairedTab.pl
* variants_annotateTab4Stats.pl
* variants_locateType.pl
to parse [functional annotations](functional-annotations.md) of gene predictions (some including [coverage](calculating-coverage.md)):
⋅⋅* 150310_MUST_hmmBestAll.py
......
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