Hello Laura,
I was wondering if it is possible to obtain in addition to the reported score and e-value for each toxin hit, also percent identity and query coverage? is such information is given for HMM profiles? It might be very useful, because to know only the score and e-value is not enough for some cases.
Thank you Vadim
Dear developer,
When I try to run the tool with the standard command (snakemake -s PathoFact/Snakefile --use-conda --reason --cores 4 –p) I got the following error:
MissingInputException in line 11 of /home/danid/PathoFact/rules/Toxin/Combine_Toxin_SignalP.smk:
Missing input files for rule R_script:
databases/library_HMM_Toxins.csv
I installed PathoFact with Conda, set up the config.yml file, and all the libraries seem to be in place, including the library_HMM_Toxins.csv appearing in the error.
I will appreciate your help, Best Vadim
Dear developer,
When I try to run the tool with the standard command (snakemake -s PathoFact/Snakefile --use-conda --reason --cores 4 –p) I got the following error:
MissingInputException in line 11 of /home/danid/PathoFact/rules/Toxin/Combine_Toxin_SignalP.smk:
Missing input files for rule R_script:
databases/library_HMM_Toxins.csv
I installed PathoFact with Conda, set up the config.yml file, and all the libraries seem to be in place, including the library_HMM_Toxins.csv appearing in the error.
I will appreciate your help, Best Vadim