Commit f13d3a4f authored by Sarah Peter's avatar Sarah Peter

Fix picard output

parent 642aed7b
......@@ -24,7 +24,7 @@
* An example command-line to run `picard` is
```
$ picard CollectAlignmentSummaryMetrics R=reference/Mus_musculus.GRCm38.dna_sm.chromosome.12.fa I=bowtie2/H3K4-TC1-ST2-D0.12.bam O=output/alignment_metrics_H3K4-TC1-ST2-D0.txt
$ picard CollectAlignmentSummaryMetrics R=reference/Mus_musculus.GRCm38.dna_sm.chromosome.12.fa I=bowtie2/H3K4-TC1-ST2-D0.12.bam O=output/alignment_metrics_H3K4-TC1-ST2-D0.12.txt
```
* You can use the `params` directive again to specify the reference file.
......
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