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R3
school
snakemake-tutorial
Commits
e1af1860
Commit
e1af1860
authored
Jun 14, 2019
by
Sarah Peter
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Just use nano; source .bash_profile on MacOS
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e1af1860
...
...
@@ -45,8 +45,17 @@ You need at least Windows 10 with the [Windows 10 Fall Creator update](https://s
### MacOS
*
Download and run the
[
Miniconda .pkg installer
](
https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.pkg
)
in the Python 3.7 version.
*
Start the "Terminal" app or
[
iTerm2
](
https://www.iterm2.com/
)
.
*
If you use something else than
`bash`
as your shell, you need run
```
bash
$
source
~/.bash_profile
```
to activate conda.
### Linux
Start the respective terminal/console app.
...
...
@@ -225,18 +234,9 @@ To track resource usage we add the `benchmark` directive, which will write perfo
Create a file called
`Snakefile`
in the current directory and open it in your favourite editor, e.g.
*
Linux:
```
bash
$
nano Snakefile
```
*
MacOS:
```
bash
$
open
-a
Textedit Snakefile
```
```
bash
$
nano Snakefile
```
Add the final rule for the mapping:
...
...
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