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R3
school
snakemake-tutorial
Commits
7c739073
Commit
7c739073
authored
May 26, 2020
by
Vilem Ded
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removing trailing spaces causing `/bin/bash command not found`
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474e8ae5
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README.md
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7c739073
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@@ -211,7 +211,7 @@ rule mapping:
output
:
"bowtie2/H3K4-TC1-ST2-D0.12.bam"
shell
:
"""
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} | \
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} |
\
samtools sort - > {output}
samtools index {output}
"""
...
...
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