Commit 7c739073 authored by Vilem Ded's avatar Vilem Ded

removing trailing spaces causing `/bin/bash command not found`

parent 474e8ae5
......@@ -211,7 +211,7 @@ rule mapping:
output: "bowtie2/H3K4-TC1-ST2-D0.12.bam"
shell:
"""
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} | \
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} | \
samtools sort - > {output}
samtools index {output}
"""
......
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