Commit 4a0f0756 authored by Aurélien Ginolhac's avatar Aurélien Ginolhac 🚴

first corrections after mapping

parent a85dcfe1
......@@ -59,7 +59,7 @@ We will use conda on two levels in this tutorial. First we use a conda environme
(node)$> chmod u+x Miniconda3-latest-Linux-x86_64.sh
(node)$> ./Miniconda3-latest-Linux-x86_64.sh
```
You need to specify your installation destination, e.g. `/home/users/<your_username>/tools/miniconda3`. You must use the **full** path and can**not** user `$HOME/tools/miniconda3`. Answer `yes` to initialize Miniconda3.
You need to specify your installation destination, e.g. `/home/users/<your_username>/tools/miniconda3`. You must use the **full** path and can**not** use `$HOME/tools/miniconda3`. Answer `yes` to initialize Miniconda3.
The installation will modify your `.bashrc` to make conda directly available after each login. To activate the changes now, run
......@@ -78,12 +78,12 @@ We will use conda on two levels in this tutorial. First we use a conda environme
(node)$> conda create -n bioinfo_tutorial
(node)$> conda activate bioinfo_tutorial
```
You can see that your prompt will now be prefixed with `(bioinfo_tutorial)` to show which environment is active. For the rest of the tutorial make sure that you always have this environment active.
After validation of the creation step, once activation you can see that your prompt will now be prefixed with `(bioinfo_tutorial)` to show which environment is active. For the rest of the tutorial make sure that you always have this environment active.
5. Install snakemake:
```bash
(node)$> conda install -c bioconda -c conda-forge snakemake-minimal
(bioinfo_tutorial) (node)$> conda install -c bioconda -c conda-forge snakemake-minimal
```
......@@ -253,7 +253,7 @@ s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
19.1737 0:00:19 262.14 1404.55 258.79 258.94 0.00 0.00 0.00
```
After this step your working directory should contain the following files:
After this step your working directory should contain the following files (using the `tree` command):
```
.
......
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