Commit 39008b79 authored by Sarah Peter's avatar Sarah Peter

Merge branch 'patch-1' into 'master'

removing trailing spaces causing `/bin/bash command not found`

See merge request !4
parents 474e8ae5 7c739073
......@@ -211,7 +211,7 @@ rule mapping:
output: "bowtie2/H3K4-TC1-ST2-D0.12.bam"
shell:
"""
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} | \
bowtie2 -x reference/Mus_musculus.GRCm38.dna_sm.chromosome.12 -U {input} | \
samtools sort - > {output}
samtools index {output}
"""
......
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