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2022/2022-02-22_IT101-DM/slides/index.md

+# IT101 - Working with computers
+<br>IT101 - Working with computers<br>
+## Feb 22th, 2022
+
+<div style="top: 6em; left: 0%; position: absolute;">
+    <img src="theme/img/lcsb_bg.png">
+</div>
+
+<div style="top: 5em; left: 60%; position: absolute;">
+    <img src="slides/img/r3-training-logo.png" height="200px">
+    <br><br><br><br>
+    <h3></h3>
+    <br><br><br>
+    <h4>
+        Nene Barry/Vilem Ded<br>
+        Data Steward<br>
+        nene.barry@uni.lu/lcsb-datastewards@uni.lu<br>
+        <i>Luxembourg Centre for Systems Biomedicine</i>
+    </h4>
+</div>

2022/2022-02-22_IT101-DM/slides/ingestion.md

+# Data housekeeping
+## Available data storage
+<div class='fragment' style="position:absolute">
+<img src="slides/img/LCSB_storages_full.png" height="750px">
+</div>
+
+<div class='fragment' style="position:relative">
+<img src="slides/img/LCSB_storages_personal-crossed.png" height="750px">
+
+<div style="position:absolute;left:65%;top:60%">
+
+* Unless consortium/project has formally agreed to use a secure commercial cloud
+
+</div>
+
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+
+
+
+# Data ingestion: Transfer and Integrity
+  * When sending data: <font color="red">Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!</font>
+
+<div class="fragment">
+Data can be corrupted:
+
+  * (non-)malicious modification
+  * faulty file transfer
+  * disk corruption
+</div>
+  
+<div class="fragment">
+
+### Solution
+
+ * disable write access to the source data
+ * generate checksums!
+ 
+<div style="position:absolute;left:40%;top:30%">
+<img src="slides/img/checksum.png" width="500px">
+</div>
+</div>
+
+<div class="fragment" style="position:relative; left:0%">
+
+
+## When to generate checksums?
+* before data transfer
+  - new dataset from collaborator
+  - upload to remote repository
+
+* long term storage
+  - master version of dataset
+  - snapshot of data for publication
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+
+
+# Data ingestion/Integrity
+## Encryption
+<div class='fragment' style="position:relative;left:25%;top:60%">
+<img  align="middle" height="300px" src="slides/img/encryption.png">
+</div>
+
+<div class='fragment'>
+
+* Guaranted confidentiality
+</div>
+<div class='fragment'>
+
+* Encryption key need to be kept safe
+</div>
+<div class='fragment'>
+
+* <font color= red>Loosing your encryption key means loosing your data!</font>
+</div>
+<div class='fragment'>
+
+* Make a off-site backup of your data
+</div>
+
+

2022/2022-02-22_IT101-DM/slides/introduction.md

+# Introduction
+<div  class="fragment" style="position:absolute">
+
+## Learning objectives
+
+  * How to manage your data
+  * How to look and analyze your data
+  * Solving issues with computers
+  * Reproduciblity in the research data life cycle
+</div>
+
+<div  class="fragment" style="position:relative;top:80%;left:60%">
+
+## Pertains to practically all people at LCSB
+   * Scientists
+   * PhD candidates
+   * Technicians
+   * Administrators
+</div>
+
+<center>
+<img   height="450px" src="slides/img/wordcloud.png"><br>
+</center>
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2022/2022-02-22_IT101-DM/slides/list.json

+[
+    { "filename": "index.md" },
+    { "filename": "introduction.md" },
+    { "filename": "access_management.md" },
+    { "filename": "data-introduction.md" },
+    { "filename": "data_flow.md" },
+    { "filename": "ingestion.md" },
+    { "filename": "storage_setup.md" },
+    { "filename": "physical_security.md" },
+    { "filename": "data-housekeeping.md" },
+    { "filename": "howtos.md" },
+    { "filename": "reproducibility.md" },
+    { "filename": "code_versioning.md" },
+    { "filename": "visualization.md" },
+    { "filename": "data_life_cycle.md" },
+    { "filename": "problem_solving.md" },
+    { "filename": "fair-principles.md" },
+    { "filename": "r3_group.md" },
+    { "filename": "thanks.md" }
+]
\ No newline at end of file