Commit fdb0de97 authored by Jacek Lebioda's avatar Jacek Lebioda
Browse files

chore(content): corrected the links

parent a3c547b6
......@@ -57,9 +57,15 @@ Create the backup:
- 'echo -e "Host *\n\tStrictHostKeyChecking no\n\n" > ~/.ssh/config'
- echo "$KNOWNHOSTS" > ~/.ssh/known_hosts
- chmod 644 ~/.ssh/known_hosts
artifacts:
expire_in: 2 weeks
paths:
- backups
script:
- ssh -p $SSHPORT $SSHCONNECT "mkdir -p ~/web ~/backups/; cd /var/www/sites/r3lab.uni.lu; tar -zcvf ~/backups/backup_$(date +'%Y_%m_%d').tar.gz *"
- ssh -p $SSHPORT $SSHCONNECT "cd ~/backups/; ls -tr | head -n -3 | xargs --no-run-if-empty rm "
- mkdir -p backups
- scp -P $SSHPORT -r $SSHCONNECT:~/backups/backup_$(date +'%Y_%m_%d').tar.gz backups/.
## Recovery from backups
Recover website from backup:
......
......@@ -16,9 +16,9 @@
title: R3 pages
email: lcsb-sysadmins@example.com
description: >- # this means to ignore newlines until "baseurl:"
Write an awesome description for your new site here. You can edit this
line in _config.yml. It will appear in your document head meta (for
Google search results) and in your feed.xml site description.
Responsible and Reproducible Research (R3).
The aim of the R3 initiative at the LCSB is to raise research quality and increase the overall reproducibility of scientific results.
This ambitious goal is achieved through state-of-the-art infrastructure, GDPR compliant data processes and data handling methods, as well as platforms and tools for high-quality scientific computing code.
# URL settings that will be used to access on your local machine
# Note #1: by default you will need to use port 4000 (https://localhost:4000/website) to access the website in your browser running on your machine with `bundle exec jekyll serve`
......
......@@ -7,12 +7,13 @@ permalink: /frozen/imp
{% rtitle IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses %}
Please cite the article on [Genome Biology](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1116-8).
Shaman Narayanasamy†, Yohan Jarosz†, Emilie E. L. Muller, Anna Heintz-Buschart, Malte Herold, Anne Kaysen, Cédric C. Laczny, Nicolás Pinel, Patrick May and Paul Wilmes*
{% endrtitle %}
{% rgridblock a-unique-id %}
{% rblock Website | fas fa-globe %}
The **IMP** website hosted within *R3lab* frame is available [here](https://imp.pages.uni.lu/web/).
The **IMP** website hosted within *R3lab* frame is available [here](https://r3lab.uni.lu/web/imp).
{% endrblock %}
{% rblock Source code | fas fa-code %}
......
......@@ -8,6 +8,7 @@ permalink: /frozen/smartr
{% rtitle SmartR: An open-source platform for interactive visual analytics for translational research data %}
Please cite the article on [Oxford Bioinformatics](https://doi.org/10.1093/bioinformatics/btx137).
Sascha Herzinger, Wei Gu, Venkata Satagopam, Serge Eifes, Kavita Rege, Adriano Barbosa-Silva, Reinhard Schneider, on behalf of the eTRIKS Consortium
{% endrtitle %}
......
......@@ -12,12 +12,12 @@ permalink: /websites/
* **[TGM pipeline]({{ "web/tgm-pipeline/" | relative_url }})** - a platform for visually-aided exploration, analysis and interpretation of high-throughput translational medicine data
* **[IMP]({{ "web/imp-doc/" | relative_url }})** - Integrated Meta-omic Pipeline
* **[IMP]({{ "web/imp/" | relative_url }})** - Integrated Meta-omic Pipeline
* **[MINERVA](https://minerva.pages.uni.lu/doc/)** - a platform for Molecular Interaction NEtwoRk VisuAlization
* **[SYSCID](http://datacatalog.elixir-luxembourg.org/limesurvey/index.php?r=survey/index/sid/395386&lang=en)** - Data Management Plan Information Collection
* **[CaSiAn]({{ "web/casian-doc/" | relative_url }})** - CaSiAn Website
* **[CaSiAn]({{ "web/casa/" | relative_url }})** - CaSiAn Website
* **[MIC-MAC](https://isc.pages.uni.lu/micmac/)** - A Pipeline for High-throughput Microglia Morphology Analysis
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