1. 29 Jun, 2015 1 commit
  2. 18 Jun, 2015 1 commit
  3. 11 May, 2015 1 commit
  4. 26 Feb, 2015 1 commit
  5. 26 Jan, 2015 1 commit
  6. 16 Jan, 2015 1 commit
  7. 09 Oct, 2014 1 commit
  8. 03 Jul, 2014 1 commit
  9. 25 Apr, 2014 1 commit
  10. 15 Apr, 2014 1 commit
  11. 08 Apr, 2014 1 commit
  12. 28 Feb, 2014 1 commit
  13. 19 Feb, 2014 1 commit
  14. 06 Feb, 2014 1 commit
  15. 12 Jan, 2014 1 commit
  16. 08 Jan, 2014 1 commit
  17. 26 Nov, 2013 1 commit
  18. 10 Sep, 2013 1 commit
  19. 26 Jan, 2012 1 commit
  20. 18 Jul, 2010 1 commit
  21. 17 Jul, 2010 1 commit
  22. 30 Jun, 2010 1 commit
    • Aaron's avatar
      Multiple changes. · 184656c1
      Aaron authored
      	1.  Added support for VCF 4.0.  BED.end is based on the size of the REF allele in the VCF entry.
      	2.  Fixed a bug in BamReader.cpp that bombed when seq and qual are == "*"
      	3.  Changed the Makefiles to inherit flags from the master Makefile in the root directory.
      	4.  Fixed a bug in bedToBam to created incorrect CIGAR strings for the first block.
      184656c1
  23. 26 Apr, 2010 1 commit
  24. 15 Apr, 2010 1 commit
  25. 05 Jan, 2010 1 commit
  26. 04 Jan, 2010 1 commit
  27. 16 Nov, 2009 1 commit
  28. 05 May, 2009 1 commit
    • Aaron Quinlan's avatar
      Strandedness. reportBed in bedFile. peIntersect · ac52b452
      Aaron Quinlan authored
      	1. Added strandedness to relevant programs (e.g. intersectBed, mergeBed, etc.)
      	2. Moved reportBed and reportBedRange to bedFile.cpp to clean up code
      	3. Sped up file parsing.  Added lineFileUtilities.cpp
      	4. Added peIntersectBed
      ac52b452
  29. 26 Apr, 2009 1 commit
  30. 24 Apr, 2009 1 commit
    • Aaron Quinlan's avatar
      First public source release. Version 1.1 · ff4edaf0
      Aaron Quinlan authored
      	1.  Added a README for installation
      	2.  Modified intersectBed and windowBed to call one function for
      	    finding overlaps.  This function is now called when reading
      	    from cin or from a file.
      	3.  Added acknowledgements.
      	4.  Corrected the PROGRAM_NAME in coverageBed
      ff4edaf0
  31. 10 Apr, 2009 1 commit
  32. 09 Apr, 2009 1 commit