1. 18 Jun, 2015 1 commit
  2. 04 May, 2015 1 commit
  3. 26 Feb, 2015 1 commit
  4. 28 Feb, 2014 1 commit
  5. 06 Feb, 2014 1 commit
  6. 28 Oct, 2013 1 commit
  7. 10 Sep, 2013 1 commit
  8. 02 Nov, 2012 1 commit
  9. 26 Jan, 2012 2 commits
  10. 17 Jan, 2012 1 commit
  11. 29 Dec, 2011 1 commit
  12. 12 Dec, 2011 2 commits
  13. 21 Oct, 2011 1 commit
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  15. 17 Jun, 2011 1 commit
  16. 23 Jul, 2010 1 commit
  17. 18 Jul, 2010 2 commits
  18. 17 Jul, 2010 1 commit
  19. 30 Jun, 2010 1 commit
    • Aaron's avatar
      Multiple changes. · 184656c1
      Aaron authored
      	1.  Added support for VCF 4.0.  BED.end is based on the size of the REF allele in the VCF entry.
      	2.  Fixed a bug in BamReader.cpp that bombed when seq and qual are == "*"
      	3.  Changed the Makefiles to inherit flags from the master Makefile in the root directory.
      	4.  Fixed a bug in bedToBam to created incorrect CIGAR strings for the first block.
      184656c1
  20. 29 Jun, 2010 2 commits
  21. 26 Apr, 2010 1 commit
  22. 15 Apr, 2010 1 commit
  23. 10 Jan, 2010 1 commit
  24. 05 Jan, 2010 1 commit
  25. 04 Jan, 2010 2 commits
  26. 05 May, 2009 2 commits
  27. 26 Apr, 2009 1 commit
  28. 24 Apr, 2009 1 commit
    • Aaron Quinlan's avatar
      First public source release. Version 1.1 · ff4edaf0
      Aaron Quinlan authored
      	1.  Added a README for installation
      	2.  Modified intersectBed and windowBed to call one function for
      	    finding overlaps.  This function is now called when reading
      	    from cin or from a file.
      	3.  Added acknowledgements.
      	4.  Corrected the PROGRAM_NAME in coverageBed
      ff4edaf0
  29. 10 Apr, 2009 1 commit
  30. 09 Apr, 2009 1 commit