1. 22 Jul, 2009 1 commit
    • Aaron's avatar
      Version 2.1.1 · 235f6e7a
      Aaron authored
      	1. Added limits.h to bedFile.h to prevent compilation errors on some systems.
      	2. Fixed the bedFile.cpp parsing logic to allow proper parsing of track and browser lines
      235f6e7a
  2. 25 Jun, 2009 2 commits
  3. 15 Jun, 2009 1 commit
    • Aaron's avatar
      VERSION 2.1.0 · 23c77070
      Aaron authored
      	1. Fixed a bug in peIntersectBed that prevented -a from being correctly handled when passed via stdin.
      	2. Added new functionality to coverageBed that calculates the density of coverage.
      	3. Fixed bug in genomeCoverageBed.
      23c77070
  4. 29 May, 2009 1 commit
  5. 19 May, 2009 4 commits
  6. 13 May, 2009 1 commit
  7. 12 May, 2009 1 commit
  8. 11 May, 2009 2 commits
  9. 06 May, 2009 1 commit
  10. 05 May, 2009 3 commits
  11. 29 Apr, 2009 1 commit
  12. 28 Apr, 2009 9 commits
  13. 27 Apr, 2009 1 commit
    • Aaron Quinlan's avatar
      Version 1.2. Added closestBed, linksBed and subtractBed · a1af7c6a
      Aaron Quinlan authored
      	1.  Added subtractBed.
      		A. Fixed bug that prevented "split" overlaps from being reported.
      		B. Prevented A from being reported if >=1 feature in B completely spans it.
      	2.  Added linksBed.
      	3.  Added the ability to define separate windows for upstream and downstream to windowBed.
      a1af7c6a
  14. 26 Apr, 2009 11 commits
  15. 24 Apr, 2009 1 commit