1. 11 Feb, 2012 1 commit
  2. 05 Jul, 2011 3 commits
  3. 30 Jun, 2011 1 commit
  4. 03 Jan, 2011 1 commit
  5. 18 Jul, 2010 1 commit
  6. 04 Jul, 2010 1 commit
    • Aaron's avatar
      Large commit. · 3cba5c6c
      Aaron authored
      	A. Fixed massive bug in parseBedLine that disallowed BED features with start = 0.  Bad news.
      	1. Moved ToString to lineFileUtilities
      	2. Added tabFile class.  Works with gzip as well.
      	3. Changed groupBy to use the new TabFile class.
      	4. Added new collapse feature to groupBy.
      3cba5c6c
  7. 29 Jun, 2010 1 commit
  8. 10 Mar, 2010 1 commit
  9. 03 Jan, 2010 1 commit
  10. 22 Jul, 2009 1 commit
    • Aaron's avatar
      Version 2.1.1 · 235f6e7a
      Aaron authored
      	1. Added limits.h to bedFile.h to prevent compilation errors on some systems.
      	2. Fixed the bedFile.cpp parsing logic to allow proper parsing of track and browser lines
      235f6e7a
  11. 05 May, 2009 1 commit
    • Aaron Quinlan's avatar
      Strandedness. reportBed in bedFile. peIntersect · ac52b452
      Aaron Quinlan authored
      	1. Added strandedness to relevant programs (e.g. intersectBed, mergeBed, etc.)
      	2. Moved reportBed and reportBedRange to bedFile.cpp to clean up code
      	3. Sped up file parsing.  Added lineFileUtilities.cpp
      	4. Added peIntersectBed
      ac52b452