GitLab

Addressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-co…

Removed accidental copy in BinTree to fix speed

Changed common help to remove -names, -filenames, and -sortout from all tools but intersect and closest.

Addressed BinTree memory blow-up; -m in fisher (w/ unit tests)

Getfasta fixes

If modification time of a FASTA index file is less than modification
time of its FASTA file, then the warning message is shown; resolves
#228.

fixed sample and coverage unit tests, fixed up CommonHelp for all PFM tools

corected unit test files for VCF insertions; changed to min instead of m...

Fix a crash bug (when end == -1).

Don't rebuild FileRecordTools/FileRecord*.o every time.
Clean version_git.h.

The previous maxVal initialisation elicited a warning; by using unsigned
we can format all values of int including the most negative anyway.

...so that namespace "std" already exists when we try to use it,
as it will have been declared by the standard headers #included.
Doing otherwise elicits a warning from Clang.