diff --git a/bin/closestBed b/bin/closestBed
index d7851134769e85b0bc9950affad51cf5e8e11e2b..e94cc484f592158187dd08fabfa9014021dbfc07 100755
Binary files a/bin/closestBed and b/bin/closestBed differ
diff --git a/bin/pairToPair b/bin/pairToPair
index 3a2ede01fae21d0f18f07aadb92f5de4467dcd30..397f9f6d8a2e2430433fe9b6170024616bdb64c1 100755
Binary files a/bin/pairToPair and b/bin/pairToPair differ
diff --git a/bin/subtractBed b/bin/subtractBed
index 0a55fdcff738f36893c2b45e4abe1d2b4aec3765..4c1aa74f8248b8c67a03dc63a4aad1d205223aaf 100755
Binary files a/bin/subtractBed and b/bin/subtractBed differ
diff --git a/bin/windowBed b/bin/windowBed
index 13592c6ea49a61eff6ad93307e048b45adab25a2..37b7a59ff5ff18c88e40b386602942196af9323e 100755
Binary files a/bin/windowBed and b/bin/windowBed differ
diff --git a/obj/closestMain.o b/obj/closestMain.o
index cd613d42842401f8eb5a2218914fe7a6182ce5b6..5d3d000363f35b5f4a6d20d9dc4276d19f09df1d 100644
Binary files a/obj/closestMain.o and b/obj/closestMain.o differ
diff --git a/obj/pairToPairMain.o b/obj/pairToPairMain.o
index 995e8a0d167962a2bb06116fb709596a9ac01a33..5048080f12f9914f50095592bd20a575a942c369 100644
Binary files a/obj/pairToPairMain.o and b/obj/pairToPairMain.o differ
diff --git a/obj/subtractMain.o b/obj/subtractMain.o
index c49f0af512ac0e9370392d200f459cb56afe4bf9..bdf6b3c4be116fd0a087855aae8b2bf9e98babcf 100644
Binary files a/obj/subtractMain.o and b/obj/subtractMain.o differ
diff --git a/obj/windowMain.o b/obj/windowMain.o
index 67c34aee99078326c7973f3910ce356d4521ae36..251607d614f41c5d27f78732194e684e7779560c 100644
Binary files a/obj/windowMain.o and b/obj/windowMain.o differ
diff --git a/src/closestBed/closestMain.cpp b/src/closestBed/closestMain.cpp
index e3f5da62b96ac4fdc8b4758e53634bf2e5ae9346..4ae7ae5dec7a72d491367094a3e6d4ef9306a1d0 100755
--- a/src/closestBed/closestMain.cpp
+++ b/src/closestBed/closestMain.cpp
@@ -107,7 +107,7 @@ void ShowHelp(void) {
 	cerr << "Author:  Aaron Quinlan (aaronquinlan@gmail.com)" << endl;
 
 	cerr << "Summary: For each feature in BED A, finds the closest " << endl;
-	cerr << "\t\t feature (upstream or downstream) in BED B." << endl << endl;
+	cerr << "\t feature (upstream or downstream) in BED B." << endl << endl;
 
 	cerr << "Usage:   " << PROGRAM_NAME << " [OPTIONS] -a <a.bed> -b <b.bed>" << endl << endl;
 
diff --git a/src/pairToPair/pairToPairMain.cpp b/src/pairToPair/pairToPairMain.cpp
index 8bd9e338d590279dfa02148c113368ffd4d3fb2d..e2e8a1b15b03168fa1c5d1ca1199d5c16c013f3f 100755
--- a/src/pairToPair/pairToPairMain.cpp
+++ b/src/pairToPair/pairToPairMain.cpp
@@ -139,7 +139,7 @@ void ShowHelp(void) {
 	cerr 								<< "\t\tneither\tReport overlaps if neither end of A overlaps B." << endl;
 
 	cerr 								<< "\t\tboth\tReport overlaps if both ends of A overlap B." << endl;
-	cerr									<< "\t\t\t- Default." << endl << endl;
+	cerr									<< "\t\t- Default." << endl << endl;
 
 	cerr << "\t-is\t"	    			<< "Ignore strands when searching for overlaps." << endl;
 	cerr 								<< "\t\t- By default, strands are enforced." << endl << endl;
diff --git a/src/subtractBed/subtractMain.cpp b/src/subtractBed/subtractMain.cpp
index eccbc736b7f5ee6ff01e1eb0b43a085767ae65b9..7889a386151e56b533d2b29212c6541b9c8a2cce 100755
--- a/src/subtractBed/subtractMain.cpp
+++ b/src/subtractBed/subtractMain.cpp
@@ -112,7 +112,7 @@ void ShowHelp(void) {
 	cerr << "Author:  Aaron Quinlan (aaronquinlan@gmail.com)" << endl;
 
 	cerr << "Summary: Removes the portion(s) of an interval that is overlapped" << endl;
-	cerr << "\t\t by another feature(s)." << endl << endl;
+	cerr << "\t by another feature(s)." << endl << endl;
 
 	cerr << "Usage:   " << PROGRAM_NAME << " [OPTIONS] -a <a.bed> -b <b.bed>" << endl << endl;
 
diff --git a/src/windowBed/windowMain.cpp b/src/windowBed/windowMain.cpp
index 2507bc5833193d2b32584a74126b3801b66424b0..5346b6534713aca2d5c17a7bcb46781fb104cf3e 100755
--- a/src/windowBed/windowMain.cpp
+++ b/src/windowBed/windowMain.cpp
@@ -167,8 +167,8 @@ void ShowHelp(void) {
 	cerr << "Author:  Aaron Quinlan (aaronquinlan@gmail.com)" << endl;
 
 	cerr << "Summary: Examines a \"window\" around each feature in A and" << endl;
-	cerr << "\t\t reports all features in B that overlap the window. For each" << endl;
-	cerr << "\t\t overlap the entire entry in A and B are reported." << endl << endl;
+	cerr << "\t reports all features in B that overlap the window. For each" << endl;
+	cerr << "\t overlap the entire entry in A and B are reported." << endl << endl;
 
 	cerr << "Usage:   " << PROGRAM_NAME << " [OPTIONS] -a <a.bed> -b <b.bed>" << endl << endl;