Commit e8c5c14e authored by Aaron's avatar Aaron
Browse files

Inform users that map reqs. sorted input. Update default.

parent 7ad99620
......@@ -167,7 +167,7 @@ void map_help(void) {
cerr << "Options: " << endl;
cerr << "\t-c\t" << "Specify the column from the B file to map onto intervals in A." << endl;
cerr << "\t\t - Default = 4." << endl << endl;
cerr << "\t\t - Default = 5." << endl << endl;
cerr << "\t-o\t" << "Specify the operation that should be applied to -c." << endl;
cerr << "\t\t Valid operations:" << endl;
......@@ -199,7 +199,10 @@ void map_help(void) {
cerr << "\t\t- Default - \".\"" << endl << endl;
cerr << "\t-header\t" << "Print the header from the A file prior to results." << endl << endl;
cerr << "Notes: " << endl;
cerr << "\t(1) Both input files must be sorted by chrom, then start." << endl << endl;
// end the program here
exit(1);
......
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