Commit d7112cda authored by Aaron's avatar Aaron
Browse files

Playing with README.

parent ebbbd305
......@@ -26,21 +26,21 @@ http://code.google.com/p/bedtools/wiki/UsageAdvanced
Installation
------------
#. Unpack the source downloaded tarball.
#. cd into the expanded folder.
#. Type "make clean" and hit enter.
#. Type "make all" and hit enter.
#. If you encountered no errors, then all of the BED Tools should now be in bin/
If not, try to troubleshoot then email me: aaronquinlan at gmail dot com
#. Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin.
#. Use the tools.
# Unpack the source downloaded tarball.
# cd into the expanded folder.
# Type "make clean" and hit enter.
# Type "make all" and hit enter.
# If you encountered no errors, then all of the BED Tools should now be in bin/
If not, try to troubleshoot then email me: aaronquinlan at gmail dot com
# Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin.
# Use the tools.
List of available tools
-----------------------
*Utility* *Description*
========================= ====================================================
========================= =======================================================================================================
*intersectBed (BAM)* Returns overlaps between two BED/GFF/VCF files.
*pairToBed (BAM)* Returns overlaps between a paired-end BED file and a
regular BED/VCF/GFF file.
......
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