From d3f1ae59a322c214a0133e93a6a7a047dccc146a Mon Sep 17 00:00:00 2001 From: arq5x <arq5x@virginia.edu> Date: Fri, 13 Dec 2013 12:06:39 -0500 Subject: [PATCH] [DOC] fix subtract's option list: --- docs/content/tools/subtract.rst | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/docs/content/tools/subtract.rst b/docs/content/tools/subtract.rst index 50e28e19..91282858 100755 --- a/docs/content/tools/subtract.rst +++ b/docs/content/tools/subtract.rst @@ -33,12 +33,11 @@ Usage and option summary =========================== =============================================================================================================================================================================================================== Option Description =========================== =============================================================================================================================================================================================================== -**-f** Minimum overlap required as a fraction of A. Default is 1E-9 (i.e. 1bp). -**-s** Force "strandedness". That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. +**-f** Minimum overlap required as a fraction of A. Default is 1E-9 (i.e. 1bp). +**-s** Force "strandedness". That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. **-S** Require different strandedness. That is, only report hits in B that overlap A on the _opposite_ strand. By default, overlaps are reported without respect to strand. **-A** Remove entire feature if any overlap. That is, by default, only subtract the portion of A that overlaps B. Here, if any overlap is found (or ``-f`` amount), the entire feature is removed. -**-N** Same as -A except when used with -f, the amount is the sum - of all features (not any single feature). +**-N** Same as -A except when used with -f, the amount is the sum of all features (not any single feature). =========================== =============================================================================================================================================================================================================== -- GitLab