diff --git a/src/mapFile/mapMain.cpp b/src/mapFile/mapMain.cpp index 49d1b270431d1be7800b669159b0a3d32dc2421f..933fe0c1312bb47e6e66af72ea44ecce0e0fb098 100644 --- a/src/mapFile/mapMain.cpp +++ b/src/mapFile/mapMain.cpp @@ -48,6 +48,10 @@ void map_help(void) { cerr << "Options: " << endl; + cerr << "\t-c\t" << "Specify columns from the B file to map onto intervals in A." << endl; + cerr << "\t\tDefault: 5." << endl; + cerr << "\t\tMultiple columns can be specified in a comma-delimited list." << endl << endl; + KeyListOpsHelp(); diff --git a/src/mergeFile/mergeMain.cpp b/src/mergeFile/mergeMain.cpp index cf6804e08211b47ffe86fdd42f0ef5a31c378264..2bee4e32ebb9a34118bf60f23b84dfda2fedb845 100644 --- a/src/mergeFile/mergeMain.cpp +++ b/src/mergeFile/mergeMain.cpp @@ -66,6 +66,9 @@ void merge_help(void) { cerr << "\t\t- Note: negative values enforce the number of b.p. required for overlap." << endl << endl; cerr << "\t-header\t" << "Print the header from the A file prior to results." << endl << endl; + cerr << "\t-c\t" << "Specify columns from the input file to operate upon (see -o option, below)." << endl; + cerr << "\t\tMultiple columns can be specified in a comma-delimited list." << endl << endl; + KeyListOpsHelp(); cerr << "Notes: " << endl; cerr << "\t(1) All output, regardless of input type (e.g., GFF or VCF)" << endl; diff --git a/src/utils/KeyListOps/KeyListOps.cpp b/src/utils/KeyListOps/KeyListOps.cpp index 58544ef36075291f65b0122d7d48cec79498c91d..c71e2425dd3008e6c9952556d9eef1df588c3407 100644 --- a/src/utils/KeyListOps/KeyListOps.cpp +++ b/src/utils/KeyListOps/KeyListOps.cpp @@ -376,9 +376,6 @@ const QuickString & KeyListOps::getOpVals(RecordKeyList &hits) } void KeyListOpsHelp() { - cerr << "\t-c\t" << "Specify columns from the B file to map onto intervals in A." << endl; - cerr << "\t\tDefault: 5." << endl; - cerr << "\t\tMultiple columns can be specified in a comma-delimited list." << endl << endl; cerr << "\t-o\t" << "Specify the operation that should be applied to -c." << endl; cerr << "\t\tValid operations:" << endl;