From d0fe42c258145644db30e915ef7b08255afd15c4 Mon Sep 17 00:00:00 2001
From: arq5x <arq5x@virginia.edu>
Date: Thu, 17 Apr 2014 13:07:28 -0400
Subject: [PATCH] allow merge -d to have negative values for minimum overlap.
---
src/utils/Contexts/ContextMerge.cpp | 13 ++++++-------
1 file changed, 6 insertions(+), 7 deletions(-)
diff --git a/src/utils/Contexts/ContextMerge.cpp b/src/utils/Contexts/ContextMerge.cpp
index d30b0991..57ee3709 100644
--- a/src/utils/Contexts/ContextMerge.cpp
+++ b/src/utils/Contexts/ContextMerge.cpp
@@ -116,13 +116,12 @@ bool ContextMerge::handle_d() {
if ((_i+1) < _argc) {
if (isNumeric(_argv[_i+1])) {
int dist = str2chrPos(_argv[_i+1]);
- if (dist >=0 ) {
- _maxDistance = dist;
- markUsed(_i - _skipFirstArgs);
- _i++;
- markUsed(_i - _skipFirstArgs);
- return true;
- }
+
+ _maxDistance = dist;
+ markUsed(_i - _skipFirstArgs);
+ _i++;
+ markUsed(_i - _skipFirstArgs);
+ return true;
}
}
_errorMsg = "\n***** ERROR: -d option must be followed by an integer value *****";
--
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