From c74514fd657055d3ba68b26859d1236b77d1d476 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Wed, 2 Feb 2011 11:58:56 -0500
Subject: [PATCH] Fixed -wao and -wo in intersectBed for zero-length features.
---
src/intersectBed/intersectBed.cpp | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/intersectBed/intersectBed.cpp b/src/intersectBed/intersectBed.cpp
index 8e94677e..d6ec2c28 100644
--- a/src/intersectBed/intersectBed.cpp
+++ b/src/intersectBed/intersectBed.cpp
@@ -144,7 +144,8 @@ void BedIntersect::ReportOverlapDetail(const int &overlapBases, const BED &a, co
else if (_writeOverlap == true) {
_bedA->reportBedTab(a);
_bedB->reportBedTab(b);
- printf("%d\n", overlapBases);
+ if (b.zeroLength == false) printf("%d\n", overlapBases);
+ else printf("0\n");
}
}
--
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