From c380cf59112cd2f2f75e9636fe3673fe40d9852c Mon Sep 17 00:00:00 2001
From: arq5x <arq5x@virginia.edu>
Date: Sat, 1 Feb 2014 16:33:40 -0500
Subject: [PATCH] allow RecordOutputMgr to print a record followed by arbitray
string
---
src/utils/FileRecordTools/RecordOutputMgr.cpp | 10 +++++-----
src/utils/FileRecordTools/RecordOutputMgr.h | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/utils/FileRecordTools/RecordOutputMgr.cpp b/src/utils/FileRecordTools/RecordOutputMgr.cpp
index 880face5..57fc8ac4 100644
--- a/src/utils/FileRecordTools/RecordOutputMgr.cpp
+++ b/src/utils/FileRecordTools/RecordOutputMgr.cpp
@@ -117,11 +117,10 @@ void RecordOutputMgr::printRecord(const Record *record)
printRecord(keyList);
}
-void RecordOutputMgr::printRecord(const Record *record, const string value)
+void RecordOutputMgr::printRecord(const Record *record, const QuickString & value)
{
- RecordKeyList keyList(record);
- printRecord(keyList);
- _outBuf.append(value.c_str());
+ printRecord(record);
+ _outBuf.append(value);
newline();
if (needsFlush()) {
@@ -213,7 +212,8 @@ void RecordOutputMgr::printRecord(RecordKeyList &keyList, RecordKeyList *blockLi
}
void RecordOutputMgr::checkForHeader() {
- if (_context->getProgram() == ContextBase::INTERSECT) {
+ if (_context->getProgram() == ContextBase::INTERSECT ||
+ _context->getProgram() == ContextBase::MAP) {
if (_context->getPrintHeader()) {
_outBuf.append(_context->getHeader((static_cast<ContextIntersect *>(_context))->getQueryFileIdx()));
}
diff --git a/src/utils/FileRecordTools/RecordOutputMgr.h b/src/utils/FileRecordTools/RecordOutputMgr.h
index 7758df29..c6921561 100644
--- a/src/utils/FileRecordTools/RecordOutputMgr.h
+++ b/src/utils/FileRecordTools/RecordOutputMgr.h
@@ -28,7 +28,7 @@ public:
void printRecord(const Record *record);
void printRecord(RecordKeyList &keyList);
// Added by ARQ
- void printRecord(const Record *record, const string value);
+ void printRecord(const Record *record, const QuickString & value);
private:
typedef enum { NOT_BAM, BAM_AS_BAM, BAM_AS_BED} printBamType;
--
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