diff --git a/test/reldist/test-reldist.sh b/test/reldist/test-reldist.sh index eebde8bda5c3608f9477bd0e91b2028d627e131b..fc315127c1f301e9484891a93c95ee5956d6e16a 100644 --- a/test/reldist/test-reldist.sh +++ b/test/reldist/test-reldist.sh @@ -1,4 +1,5 @@ BT=${BT-../../bin/bedtools} +DATA=${DATA-../../data} check() { @@ -17,8 +18,8 @@ echo " reldist.t01...\c" echo \ "reldist count total fraction 0.00 43424 43424 1.000" > exp -$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \ - -b ../../data/refseq.chr1.exons.bed.gz > obs +$BT reldist -a $DATA/refseq.chr1.exons.bed.gz \ + -b $DATA/refseq.chr1.exons.bed.gz > obs check obs exp rm obs exp @@ -79,8 +80,8 @@ echo \ 0.47 850 43408 0.020 0.48 1006 43408 0.023 0.49 937 43408 0.022" > exp -$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \ - -b ../../data/aluY.chr1.bed.gz > obs +$BT reldist -a $DATA/refseq.chr1.exons.bed.gz \ + -b $DATA/aluY.chr1.bed.gz > obs check obs exp rm obs exp @@ -143,7 +144,7 @@ echo \ 0.48 365 43422 0.008 0.49 336 43422 0.008 0.50 38 43422 0.001" > exp -$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \ - -b ../../data/gerp.chr1.bed.gz > obs +$BT reldist -a $DATA/refseq.chr1.exons.bed.gz \ + -b $DATA/gerp.chr1.bed.gz > obs check obs exp -rm obs exp \ No newline at end of file +rm obs exp