From a45f98c0d8f89f6c25b9d5bd0f39b4b41d6a8bfd Mon Sep 17 00:00:00 2001
From: arq5x <arq5x@virginia.edu>
Date: Sat, 1 Feb 2014 16:36:12 -0500
Subject: [PATCH] add methods to extract column from record by its col. number
(2)
---
.../FileRecordTools/Records/Bed12Interval.cpp | 26 +++++++++++++++++++
.../FileRecordTools/Records/Bed12Interval.h | 3 +++
2 files changed, 29 insertions(+)
diff --git a/src/utils/FileRecordTools/Records/Bed12Interval.cpp b/src/utils/FileRecordTools/Records/Bed12Interval.cpp
index 648dcccd..867a69ec 100644
--- a/src/utils/FileRecordTools/Records/Bed12Interval.cpp
+++ b/src/utils/FileRecordTools/Records/Bed12Interval.cpp
@@ -119,4 +119,30 @@ void Bed12Interval::printNull(QuickString &outBuf) const
outBuf.append("\t.\t.\t.\t.\t.\t.", 12);
}
+const QuickString &Bed12Interval::getField(int fieldNum) const
+{
+ switch (fieldNum) {
+ case 7:
+ return _thickStartStr;
+ break;
+ case 8:
+ return _thickEndStr;
+ break;
+ case 9:
+ return _itemRGB;
+ break;
+ case 10:
+ return _blockCountStr;
+ break;
+ case 11:
+ return _blockSizes;
+ break;
+ case 12:
+ return _blockStarts;
+ break;
+ default:
+ return Bed6Interval::getField(fieldNum);
+ break;
+ }
+}
diff --git a/src/utils/FileRecordTools/Records/Bed12Interval.h b/src/utils/FileRecordTools/Records/Bed12Interval.h
index a902b4f4..711800c3 100644
--- a/src/utils/FileRecordTools/Records/Bed12Interval.h
+++ b/src/utils/FileRecordTools/Records/Bed12Interval.h
@@ -52,6 +52,9 @@ public:
virtual void setBlockStarts(const string & blockStarts) { _blockStarts = blockStarts; }
virtual void setBlockStarts(const char *blockStarts) { _blockStarts = blockStarts; }
+ virtual const QuickString &getField(int fieldNum) const;
+ virtual int getNumFields() const { return 12; }
+
protected:
virtual ~Bed12Interval();
--
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