From 9b61515eb5ff64790995e1e3745f7bc40e2538b6 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 1 Sep 2011 13:25:29 -0400
Subject: [PATCH] Avoid deleting bedStream iff stdin
---
src/utils/bedFile/bedFile.cpp | 2 +-
src/utils/bedFilePE/bedFilePE.cpp | 2 +-
src/utils/bedGraphFile/bedGraphFile.cpp | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/utils/bedFile/bedFile.cpp b/src/utils/bedFile/bedFile.cpp
index c43969c3..a7c5886f 100644
--- a/src/utils/bedFile/bedFile.cpp
+++ b/src/utils/bedFile/bedFile.cpp
@@ -149,7 +149,7 @@ void BedFile::Open(void) {
// Close the BED file
void BedFile::Close(void) {
- if (bedFile != "stdin") delete _bedStream;
+ if (bedFile != "stdin" && bedFile != "-") delete _bedStream;
}
diff --git a/src/utils/bedFilePE/bedFilePE.cpp b/src/utils/bedFilePE/bedFilePE.cpp
index 19ab2b1a..023a5f58 100644
--- a/src/utils/bedFilePE/bedFilePE.cpp
+++ b/src/utils/bedFilePE/bedFilePE.cpp
@@ -47,7 +47,7 @@ void BedFilePE::Open(void) {
// Close the BEDPE file
void BedFilePE::Close(void) {
- if (bedFile != "stdin") delete _bedStream;
+ if (bedFile != "stdin" && bedFile != "-") delete _bedStream;
}
diff --git a/src/utils/bedGraphFile/bedGraphFile.cpp b/src/utils/bedGraphFile/bedGraphFile.cpp
index f3df5402..1967a9cd 100644
--- a/src/utils/bedGraphFile/bedGraphFile.cpp
+++ b/src/utils/bedGraphFile/bedGraphFile.cpp
@@ -48,7 +48,7 @@ void BedGraphFile::Open() {
// Close the BEDGRAPH file
void BedGraphFile::Close() {
- if (bedGraphFile != "stdin") {
+ if (bedGraphFile != "stdin" && bedGraphFile != "-") {
if (_bedGraphStream) {
delete _bedGraphStream;
_bedGraphStream = NULL ;
--
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