From 956e384b0cfbd794691a8f645f33efad20122ebc Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Fri, 20 Jul 2012 20:42:07 -0400
Subject: [PATCH] reset each bedpe
---
src/shuffleBed/shuffleBed.cpp | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/src/shuffleBed/shuffleBed.cpp b/src/shuffleBed/shuffleBed.cpp
index ac6f6228..5d72af4d 100644
--- a/src/shuffleBed/shuffleBed.cpp
+++ b/src/shuffleBed/shuffleBed.cpp
@@ -106,7 +106,7 @@ void BedShuffle::Shuffle() {
int lineNum = 0; // current input line number
BedLineStatus status;
- BEDPE bedEntry;
+ BEDPE bedEntry, nullBedPE;
_bedpe->Open();
while ((status = _bedpe->GetNextBedPE(bedEntry, lineNum)) != BED_INVALID)
{
@@ -114,6 +114,7 @@ void BedShuffle::Shuffle() {
ChoosePairedLocus(bedEntry);
_bedpe->reportBedPENewLine(bedEntry);
}
+ bedEntry = nullBedPE;
}
_bedpe->Close();
}
@@ -201,7 +202,7 @@ void BedShuffle::ShuffleWithExclusions() {
cerr << "Error, line " << _bed->_lineNum
<< ": tried " << MAX_TRIES
<< " potential loci for entry, but could not avoid "
- << "excluded regions. Ignoring entry and moving on."
+ << "excluded regions. Ignoring entry and moving on."
<< endl;
}
else {
--
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