From 936d013e059d05b6bb80a15b3ed348d6f76ccd65 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 30 Aug 2012 08:13:17 -0400
Subject: [PATCH] send warning to stderr.
---
reqs.txt | 1 -
setup.py | 6 ------
src/complementBed/complementBed.cpp | 3 ++-
3 files changed, 2 insertions(+), 8 deletions(-)
delete mode 100644 reqs.txt
delete mode 100644 setup.py
diff --git a/reqs.txt b/reqs.txt
deleted file mode 100644
index a7f91b07..00000000
--- a/reqs.txt
+++ /dev/null
@@ -1 +0,0 @@
-pybedtools
diff --git a/setup.py b/setup.py
deleted file mode 100644
index 0ec78682..00000000
--- a/setup.py
+++ /dev/null
@@ -1,6 +0,0 @@
-from setuptools import setup
-
-setup(
- name='bedtools',
- install_requires=["pybedtools"],
- )
diff --git a/src/complementBed/complementBed.cpp b/src/complementBed/complementBed.cpp
index b77e7f00..128ef1e4 100644
--- a/src/complementBed/complementBed.cpp
+++ b/src/complementBed/complementBed.cpp
@@ -52,7 +52,8 @@ void BedComplement::ComplementBed() {
bedVector::const_iterator bEnd = _bed->bedMapNoBin[currChrom].end();
for (; bItr != bEnd; ++bItr) {
if (bItr->end > currChromSize) {
- cout << "Warninge: end of BED entry exceeds chromosome length. Please correct." << endl;
+ cerr << "Warning: end of BED entry exceeds chromosome length. "
+ cerr << "Please correct." << endl;
_bed->reportBedNewLine(*bItr);
exit(1);
}
--
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