From 86346f3604a5b7e70eb70a74bf18233ab27e289a Mon Sep 17 00:00:00 2001
From: arq5x <arq5x@virginia.edu>
Date: Sun, 2 Feb 2014 13:35:44 -0500
Subject: [PATCH] typo.
---
docs/index.rst | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/docs/index.rst b/docs/index.rst
index d7cb41aa..c10368a5 100755
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -51,18 +51,18 @@ Commands used:
.. code-block:: bash
- # bedtools unsorted
- $ bedtools intersect \
- -a ccds.exons.bed -b aln.bam.bed \
- -c
-
# bedtools sorted
$ bedtools intersect \
-a ccds.exons.bed -b aln.bam.bed \
-c \
-sorted
- # bedmap (no error checking)
+ # bedtools unsorted
+ $ bedtools intersect \
+ -a ccds.exons.bed -b aln.bam.bed \
+ -c
+
+ # bedmap (without error checking)
$ bedmap --echo --count --bp-ovr 1 \
ccds.exons.bed aln.bam.bed
--
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