diff --git a/RELEASE_HISTORY b/RELEASE_HISTORY index 6e030b8794023092b27d6c6ec48abf634e210086..bfa184dade469a8187972fe904533d2df9eca1c2 100644 --- a/RELEASE_HISTORY +++ b/RELEASE_HISTORY @@ -1,3 +1,15 @@ +Version 2.13.4 (26-Oct-2011) +Bug Fixes +========= +1. The -sorted option (chromsweep) in intersectBed now obeys -s and -S. I had neglected to implement that. Thanks to Paul Ryvkin for pointing this out. +2. The -split option was mistakenly splitting of D CIGAR ops. +3. The Makefile was not including zlib properly for newer versions of GCC. Thanks to Istvan Albert for pointing this out and providing the solution. + +Improvements +============ +1. Thanks to Jacob Biesinger for a new option (-D) in closestBed that will report _signed_ distances. Moreover, the new option allows fine control over whether the distances are reported based on the reference genome or based on the strand of the A or B feature. Many thanks to Jacob. +2. Thanks to some nice analysis from Paul Ryvkin, I realized that the -sorted option was using way too much memory in certain cases where there is a chromosome change in a sorted BED file. This has been corrected. + Version 2.13.3 (30-Sept-2011) Bug Fixes ============ diff --git a/src/utils/version/version.h b/src/utils/version/version.h index 61cd0bc88821d391efc77951438f8c90238df6a5..a409d9faf742b893491d284e3f62b45f9cc322e9 100644 --- a/src/utils/version/version.h +++ b/src/utils/version/version.h @@ -3,6 +3,6 @@ // define the version. All tools in the // suite carry the same version number. -#define VERSION "2.13.3" +#define VERSION "2.13.4" #endif /* VERSION_H */