Commit 66397856 authored by arq5x's avatar arq5x
Browse files

fix help to reflect interface change

parent ed38d473
......@@ -16,8 +16,8 @@ void coverage_help(void) {
cerr << "\nTool: bedtools coverage (aka coverageBed)" << endl;
cerr << "Version: " << VERSION << "\n";
cerr << "Summary: Returns the depth and breadth of coverage of features from A" << endl;
cerr << "\t on the intervals in B." << endl << endl;
cerr << "Summary: Returns the depth and breadth of coverage of features from B" << endl;
cerr << "\t on the intervals in A." << endl << endl;
cerr << "Usage: " << "bedtools coverage" << " [OPTIONS] -a <bed/gff/vcf> -b <bed/gff/vcf>" << endl << endl;
......@@ -82,11 +82,11 @@ void coverage_help(void) {
CommonHelp();
cerr << "Default Output: " << endl;
cerr << "\t" << " After each entry in B, reports: " << endl;
cerr << "\t 1) The number of features in A that overlapped the B interval." << endl;
cerr << "\t 2) The number of bases in B that had non-zero coverage." << endl;
cerr << "\t 3) The length of the entry in B." << endl;
cerr << "\t 4) The fraction of bases in B that had non-zero coverage." << endl << endl;
cerr << "\t" << " After each entry in A, reports: " << endl;
cerr << "\t 1) The number of features in B that overlapped the A interval." << endl;
cerr << "\t 2) The number of bases in A that had non-zero coverage." << endl;
cerr << "\t 3) The length of the entry in A." << endl;
cerr << "\t 4) The fraction of bases in A that had non-zero coverage." << endl << endl;
exit(1);
}
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