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R3
legacy
bedtools2
Commits
66397856
Commit
66397856
authored
May 16, 2015
by
arq5x
Browse files
fix help to reflect interface change
parent
ed38d473
Changes
1
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Inline
Side-by-side
src/coverageFile/coverageHelp.cpp
View file @
66397856
...
...
@@ -16,8 +16,8 @@ void coverage_help(void) {
cerr
<<
"
\n
Tool: bedtools coverage (aka coverageBed)"
<<
endl
;
cerr
<<
"Version: "
<<
VERSION
<<
"
\n
"
;
cerr
<<
"Summary: Returns the depth and breadth of coverage of features from
A
"
<<
endl
;
cerr
<<
"
\t
on the intervals in
B
."
<<
endl
<<
endl
;
cerr
<<
"Summary: Returns the depth and breadth of coverage of features from
B
"
<<
endl
;
cerr
<<
"
\t
on the intervals in
A
."
<<
endl
<<
endl
;
cerr
<<
"Usage: "
<<
"bedtools coverage"
<<
" [OPTIONS] -a <bed/gff/vcf> -b <bed/gff/vcf>"
<<
endl
<<
endl
;
...
...
@@ -82,11 +82,11 @@ void coverage_help(void) {
CommonHelp
();
cerr
<<
"Default Output: "
<<
endl
;
cerr
<<
"
\t
"
<<
" After each entry in
B
, reports: "
<<
endl
;
cerr
<<
"
\t
1) The number of features in
A
that overlapped the
B
interval."
<<
endl
;
cerr
<<
"
\t
2) The number of bases in
B
that had non-zero coverage."
<<
endl
;
cerr
<<
"
\t
3) The length of the entry in
B
."
<<
endl
;
cerr
<<
"
\t
4) The fraction of bases in
B
that had non-zero coverage."
<<
endl
<<
endl
;
cerr
<<
"
\t
"
<<
" After each entry in
A
, reports: "
<<
endl
;
cerr
<<
"
\t
1) The number of features in
B
that overlapped the
A
interval."
<<
endl
;
cerr
<<
"
\t
2) The number of bases in
A
that had non-zero coverage."
<<
endl
;
cerr
<<
"
\t
3) The length of the entry in
A
."
<<
endl
;
cerr
<<
"
\t
4) The fraction of bases in
A
that had non-zero coverage."
<<
endl
<<
endl
;
exit
(
1
);
}
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