cerr<<"\t-d\t"<<"Maximum distance between features allowed for features"<<endl;cerr<<"\t\tto be merged."<<endl;cerr<<"\t\t- Def. 0. That is, overlapping & book-ended features are merged."<<endl;
cerr<<"\t\t- (INTEGER)"<<endl;
cerr<<"\t\t- Note: negative values enforce the number of b.p. required for overlap."<<endl<<endl;
cerr<<"\t-header\t"<<"Print the header from the A file prior to results."<<endl<<endl;
cerr<<"\t-c\t"<<"Specify columns from the input file to operate upon (see -o option, below)."<<endl;
cerr<<"\t\tMultiple columns can be specified in a comma-delimited list."<<endl<<endl;
cerr<<"\t-prec\t"<<"Sets the decimal precision for output (Default: 5)"<<endl<<endl;
KeyListOpsHelp();
allToolsCommonHelp();
cerr<<"Notes: "<<endl;
cerr<<"\t(1) The input file (-i) file must be sorted by chrom, then start."<<endl<<endl;