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R3
legacy
bedtools2
Commits
5763783a
Commit
5763783a
authored
May 18, 2015
by
Gaik Tamazian
Browse files
Test compatibility with OS X improved
parent
ab600e66
Changes
2
Show whitespace changes
Inline
Side-by-side
test/intersect/multi_intersect/test-multi_intersect.sh
View file @
5763783a
...
@@ -129,7 +129,7 @@ rm obs
...
@@ -129,7 +129,7 @@ rm obs
# output will give the correct result
# output will give the correct result
###########################################################
###########################################################
echo
" intersect.t09...
\c
"
echo
" intersect.t09...
\c
"
cat
exp1 exp2 exp3 |
sort
-k1
,1
V
-k2
,2n
>
exp
cat
exp1 exp2 exp3 |
sort
-k1
.4
,1
n
-k2
,2n
>
exp
$BT
intersect
-a
query2.bed
-b
d4.bed d5.bed d6.bed
-g
g.bed
-sortout
>
obs
$BT
intersect
-a
query2.bed
-b
d4.bed d5.bed d6.bed
-g
g.bed
-sortout
>
obs
check exp obs
check exp obs
rm
obs exp1 exp2 exp3
rm
obs exp1 exp2 exp3
...
...
test/intersect/test-intersect.sh
View file @
5763783a
...
@@ -509,6 +509,7 @@ echo " intersect.t41...\c"
...
@@ -509,6 +509,7 @@ echo " intersect.t41...\c"
echo
\
echo
\
"22"
>
exp
"22"
>
exp
$BT
intersect
-a
bug167_strandSweep.bed
-b
bug167_strandSweep.bed
-sorted
-s
-wa
-wb
|
wc
-l
>
obs
$BT
intersect
-a
bug167_strandSweep.bed
-b
bug167_strandSweep.bed
-sorted
-s
-wa
-wb
|
wc
-l
>
obs
sed
-i
's/^\s*//'
obs
check exp obs
check exp obs
rm
exp obs
rm
exp obs
...
@@ -519,6 +520,7 @@ echo " intersect.t42...\c"
...
@@ -519,6 +520,7 @@ echo " intersect.t42...\c"
echo
\
echo
\
"20"
>
exp
"20"
>
exp
$BT
intersect
-a
bug167_strandSweep.bed
-b
bug167_strandSweep.bed
-sorted
-S
-wa
-wb
|
wc
-l
>
obs
$BT
intersect
-a
bug167_strandSweep.bed
-b
bug167_strandSweep.bed
-sorted
-S
-wa
-wb
|
wc
-l
>
obs
sed
-i
's/^\s*//'
obs
check exp obs
check exp obs
rm
exp obs
rm
exp obs
...
...
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