Commit 5763783a authored by Gaik Tamazian's avatar Gaik Tamazian
Browse files

Test compatibility with OS X improved

parent ab600e66
...@@ -129,7 +129,7 @@ rm obs ...@@ -129,7 +129,7 @@ rm obs
# output will give the correct result # output will give the correct result
########################################################### ###########################################################
echo " intersect.t09...\c" echo " intersect.t09...\c"
cat exp1 exp2 exp3 | sort -k1,1V -k2,2n > exp cat exp1 exp2 exp3 | sort -k1.4,1n -k2,2n > exp
$BT intersect -a query2.bed -b d4.bed d5.bed d6.bed -g g.bed -sortout > obs $BT intersect -a query2.bed -b d4.bed d5.bed d6.bed -g g.bed -sortout > obs
check exp obs check exp obs
rm obs exp1 exp2 exp3 rm obs exp1 exp2 exp3
......
...@@ -509,6 +509,7 @@ echo " intersect.t41...\c" ...@@ -509,6 +509,7 @@ echo " intersect.t41...\c"
echo \ echo \
"22" > exp "22" > exp
$BT intersect -a bug167_strandSweep.bed -b bug167_strandSweep.bed -sorted -s -wa -wb | wc -l > obs $BT intersect -a bug167_strandSweep.bed -b bug167_strandSweep.bed -sorted -s -wa -wb | wc -l > obs
sed -i 's/^\s*//' obs
check exp obs check exp obs
rm exp obs rm exp obs
...@@ -519,6 +520,7 @@ echo " intersect.t42...\c" ...@@ -519,6 +520,7 @@ echo " intersect.t42...\c"
echo \ echo \
"20" > exp "20" > exp
$BT intersect -a bug167_strandSweep.bed -b bug167_strandSweep.bed -sorted -S -wa -wb | wc -l > obs $BT intersect -a bug167_strandSweep.bed -b bug167_strandSweep.bed -sorted -S -wa -wb | wc -l > obs
sed -i 's/^\s*//' obs
check exp obs check exp obs
rm exp obs rm exp obs
......
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