From 526119e76f8e1ef3352b070a5f23accc391b97bb Mon Sep 17 00:00:00 2001
From: arq5x <arq5x@virginia.edu>
Date: Sat, 1 Feb 2014 20:12:04 -0500
Subject: [PATCH] fix bug in merge output and cleanup jaccard test
---
src/mergeBed/mergeBed.cpp | 2 +-
test/jaccard/obs1 | 2 --
test/jaccard/obs2 | 2 --
test/jaccard/test-jaccard.sh | 1 +
4 files changed, 2 insertions(+), 5 deletions(-)
delete mode 100644 test/jaccard/obs1
delete mode 100644 test/jaccard/obs2
diff --git a/src/mergeBed/mergeBed.cpp b/src/mergeBed/mergeBed.cpp
index 526b45f5..dae9887b 100644
--- a/src/mergeBed/mergeBed.cpp
+++ b/src/mergeBed/mergeBed.cpp
@@ -219,7 +219,7 @@ void BedMerge::ReportStranded(string chrom, int start,
else if (_numEntries == false && _reportNames == true &&
_reportScores == false) {
ReportMergedNames(names);
- printf("\t\t%s\n", strand.c_str());
+ printf("\t.\t%s\n", strand.c_str());
}
// merged intervals and scores
else if (_numEntries == false && _reportNames == false &&
diff --git a/test/jaccard/obs1 b/test/jaccard/obs1
deleted file mode 100644
index ac102f83..00000000
--- a/test/jaccard/obs1
+++ /dev/null
@@ -1,2 +0,0 @@
-intersection union jaccard n_intersections
-10 140 0.0714286 1
diff --git a/test/jaccard/obs2 b/test/jaccard/obs2
deleted file mode 100644
index ac102f83..00000000
--- a/test/jaccard/obs2
+++ /dev/null
@@ -1,2 +0,0 @@
-intersection union jaccard n_intersections
-10 140 0.0714286 1
diff --git a/test/jaccard/test-jaccard.sh b/test/jaccard/test-jaccard.sh
index 9018d8af..587b924b 100644
--- a/test/jaccard/test-jaccard.sh
+++ b/test/jaccard/test-jaccard.sh
@@ -66,3 +66,4 @@ $BT jaccard -a a.bed -b b.bed > obs1
$BT jaccard -a b.bed -b a.bed > obs2
check obs1 obs2
+rm obs1 obs2
--
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