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R3
legacy
bedtools2
Commits
509e6fee
Commit
509e6fee
authored
Feb 25, 2015
by
Neil Kindlon
Browse files
Added -wb and -wo to subtract help
parent
706608e5
Changes
1
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Inline
Side-by-side
src/subtractFile/subtractMain.cpp
View file @
509e6fee
...
...
@@ -64,6 +64,14 @@ void subtract_help(void) {
cerr
<<
"
\t
-N
\t
"
<<
"Same as -A except when used with -f, the amount is the sum"
<<
endl
;
cerr
<<
"
\t\t
of all features (not any single feature)."
<<
endl
<<
endl
;
cerr
<<
"
\t
-wb
\t
"
<<
"Write the original entry in B for each overlap."
<<
endl
;
cerr
<<
"
\t\t
- Useful for knowing _what_ A overlaps. Restricted by -f and -r."
<<
endl
<<
endl
;
cerr
<<
"
\t
-wo
\t
"
<<
"Write the original A and B entries plus the number of base"
<<
endl
;
cerr
<<
"
\t\t
pairs of overlap between the two features."
<<
endl
;
cerr
<<
"
\t\t
- Overlaps restricted by -f and -r."
<<
endl
;
cerr
<<
"
\t\t
Only A features with overlap are reported."
<<
endl
<<
endl
;
cerr
<<
"
\t
-split
\t
"
<<
"Treat
\"
split
\"
BAM or BED12 entries as distinct BED intervals."
<<
endl
<<
endl
;
...
...
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