From 4c8e12217f2e588bf9fde3cdd9bd9f72d68291dc Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Wed, 5 Jan 2011 14:07:18 -0500
Subject: [PATCH] Fixed casting issue in windowBed.AddWindow() that cuased slop
positions to run off the end of the chromosome.
---
src/windowBed/windowBed.cpp | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/src/windowBed/windowBed.cpp b/src/windowBed/windowBed.cpp
index 4723e3b0..6b033612 100644
--- a/src/windowBed/windowBed.cpp
+++ b/src/windowBed/windowBed.cpp
@@ -221,19 +221,22 @@ void BedWindow::AddWindow(const BED &a, CHRPOS &fudgeStart, CHRPOS &fudgeEnd) {
// if "-", the left is right and right is left.
if (_strandWindows) {
if (a.strand == "+") {
- if ((a.start - _leftSlop) > 0) fudgeStart = a.start - _leftSlop;
+ if ((int) (a.start - _leftSlop) > 0)
+ fudgeStart = a.start - _leftSlop;
else fudgeStart = 0;
fudgeEnd = a.end + _rightSlop;
}
else {
- if ((a.start - _rightSlop) > 0) fudgeStart = a.start - _rightSlop;
+ if ((int) (a.start - _rightSlop) > 0)
+ fudgeStart = a.start - _rightSlop;
else fudgeStart = 0;
fudgeEnd = a.end + _leftSlop;
}
}
// If not, add the windows irrespective of strand
else {
- if ((a.start - _leftSlop) > 0) fudgeStart = a.start - _leftSlop;
+ if ((int) (a.start - _leftSlop) > 0)
+ fudgeStart = a.start - _leftSlop;
else fudgeStart = 0;
fudgeEnd = a.end + _rightSlop;
}
--
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