From 3491dd54fe28919cf5e2f33e5d5167244ddc409a Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 17 Nov 2011 16:31:37 -0500
Subject: [PATCH] Fixed getBamBlocks()
---
src/utils/BamTools-Ancillary/BamAncillary.cpp | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/utils/BamTools-Ancillary/BamAncillary.cpp b/src/utils/BamTools-Ancillary/BamAncillary.cpp
index 54e89f1a..09891e96 100644
--- a/src/utils/BamTools-Ancillary/BamAncillary.cpp
+++ b/src/utils/BamTools-Ancillary/BamAncillary.cpp
@@ -47,11 +47,14 @@ namespace BamTools {
if (breakOnDeletionOps == false)
currPosition += cigItr->Length;
else {
+ blocksFound = true;
currPosition += cigItr->Length;
blockStart = currPosition;
}
}
else if (cigItr->Type == 'N') {
+ blocks.push_back( BED(chrom, blockStart, currPosition, name, score, strand) );
+ blocksFound = true;
currPosition += cigItr->Length;
blockStart = currPosition;
}
--
GitLab