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R3
legacy
bedtools2
Commits
237766a7
Commit
237766a7
authored
Apr 04, 2015
by
arq5x
Browse files
add tests for getfasta
parent
5b00dced
Changes
1
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test/getfasta/test-getfasta.sh
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237766a7
...
...
@@ -76,4 +76,28 @@ echo $'chr1 assembled by consortium X\t1\t10' | $BT getfasta -fi t_fH.fa -bed -
check obs exp
rm
obs exp
\ No newline at end of file
rm
obs exp
# test IUPAC
echo
" getfasta.t08...
\c
"
echo
\
">1:0-16
AGCTYRWSKMDVHBXN
>2:0-16
agctyrwskmdvhbxn"
>
exp
$BT
getfasta
-fi
test.iupac.fa
-bed
test.iupac.bed
-fo
-
>
obs
check obs exp
rm
obs exp
# test IUPAC revcomp
echo
" getfasta.t09...
\c
"
echo
\
">1:0-16(-)
NXVDBHKMSWYRAGCT
>2:0-16(-)
nxvdbhkmswyragct"
>
exp
$BT
getfasta
-fi
test.iupac.fa
-bed
test.iupac.bed
-s
-fo
-
>
obs
check obs exp
rm
obs exp
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