Commit 237766a7 authored by arq5x's avatar arq5x
Browse files

add tests for getfasta

parent 5b00dced
......@@ -76,4 +76,28 @@ echo $'chr1 assembled by consortium X\t1\t10' | $BT getfasta -fi t_fH.fa -bed -
check obs exp
rm obs exp
\ No newline at end of file
rm obs exp
# test IUPAC
echo " getfasta.t08...\c"
echo \
">1:0-16
AGCTYRWSKMDVHBXN
>2:0-16
agctyrwskmdvhbxn" > exp
$BT getfasta -fi test.iupac.fa -bed test.iupac.bed -fo - > obs
check obs exp
rm obs exp
# test IUPAC revcomp
echo " getfasta.t09...\c"
echo \
">1:0-16(-)
NXVDBHKMSWYRAGCT
>2:0-16(-)
nxvdbhkmswyragct" > exp
$BT getfasta -fi test.iupac.fa -bed test.iupac.bed -s -fo - > obs
check obs exp
rm obs exp
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment