corected unit test files for VCF insertions; changed to min instead of max for...

corected unit test files for VCF insertions; changed to min instead of max for SV's with multiple vals

src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.cpp

@@ -153,7 +153,7 @@ int SingleLineDelimTextFileReader::getVcfSVlen() {
 		//comma found in the number, that means there are two numbers
 		int num1 = str2chrPos(startPtr, midPtr - startPtr);
 		int num2 = str2chrPos(midPtr +1, endPtr - (midPtr +1));
-		endCoord = max(abs(num1), abs(num2));
+		endCoord = min(abs(num1), abs(num2));
 	} else {
 		endCoord = abs(str2chrPos(startPtr, endPtr - startPtr));
 	}

test/intersect/bug223_sv1_a.vcf

 ##fileformat=VCFv4.1
-chr1	1	a	G	<DEL>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=-389,-4611;END=253195;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
-chr1	4	a	G	<INS>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=-4611;END=253195;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
+chr1	1	a	G	<DEL>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=-389;END=390;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
+chr1	4	a	G	<INS>	70.90	.	TOOL=LUMPY;SVTYPE=INS;SVLEN=4611;END=4615;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||

test/intersect/bug223_sv1_b.vcf

 ##fileformat=VCFv4.1
-chr1	5	a	G	<INS>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=500;END=253195;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
-chr1	15	a	G	<DEL>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=-600;END=253195;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
+chr1	5	a	G	<INS>	70.90	.	TOOL=LUMPY;SVTYPE=INS;SVLEN=500;END=505;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||
+chr1	15	a	G	<DEL>	70.90	.	TOOL=LUMPY;SVTYPE=DEL;SVLEN=-600;END=615;STR=+-:4;IMPRECISE;CIPOS=-2,137;CIEND=0,0;EVENT=791255;SUP=4;PESUP=4;SRSUP=0;EV=PE;PRIN;CSQ=intergenic_variant||||||||||