From 1ba07ada1c61b2c025ca61cfb13d6d0b96cb4a55 Mon Sep 17 00:00:00 2001
From: Jay Hesselberth <jay.hesselberth@gmail.com>
Date: Sun, 9 Feb 2014 12:59:07 -0700
Subject: [PATCH] Update related-tools.rst
Added to "related tools", seemed the most appropriate place for now.
---
docs/content/related-tools.rst | 15 ++++++++++++++-
1 file changed, 14 insertions(+), 1 deletion(-)
diff --git a/docs/content/related-tools.rst b/docs/content/related-tools.rst
index 12951bf3..85c35850 100644
--- a/docs/content/related-tools.rst
+++ b/docs/content/related-tools.rst
@@ -64,4 +64,17 @@ RetroSeq
is "a tool for discovery and genotyping of transposable element variants (TEVs)
(also known as mobile element insertions) from next-gen sequencing reads aligned
to a reference genome in BAM format". RetroSeq is developed by Thomas Keane.
-Source code can be obtained on `GitHub <https://github.com/tk2/RetroSeq>`_.
\ No newline at end of file
+Source code can be obtained on `GitHub <https://github.com/tk2/RetroSeq>`_.
+
+-------------------------
+Intersphinx documentation
+-------------------------
+BEDTools documentation pages are available via Intersphinx (http://sphinx-doc.org/ext/intersphinx.html).
+To enable this, add the following to conf.py in a Sphinx proejct:
+
+ intersphinx_mapping = {'bedtools': ('http://bedtools.readthedocs.org/en/latest/', None)}
+
+BEDtools documentation links can then be generated with e.g.:
+
+ :ref:`BEDTools:map <bedtools:map>`
+
--
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