From 12fc63b3e6bf8cbb8b4cdd661bfa4378035aa1bb Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 1 Sep 2011 07:17:09 -0400
Subject: [PATCH] Gzip detected by file extension. Weak, but only approach that
works at this point.
---
src/utils/bedFile/bedFile.cpp | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/src/utils/bedFile/bedFile.cpp b/src/utils/bedFile/bedFile.cpp
index f296b429..9faaffa5 100644
--- a/src/utils/bedFile/bedFile.cpp
+++ b/src/utils/bedFile/bedFile.cpp
@@ -135,12 +135,11 @@ void BedFile::Open(void) {
else {
_bedStream = new ifstream(bedFile.c_str(), ios::in);
- if (isGzipFile(_bedStream) == true) {
+ //if (isGzipFile(_bedStream) == true) {
+ if(bedFile.substr(bedFile.find_last_of(".") + 1) == "gz") {
delete _bedStream;
_bedStream = new igzstream(bedFile.c_str(), ios::in);
}
- // bytes were consumed. rewind.
- _bedStream->seekg(0);
// can we open the file?
if ( !(_bedStream->good()) ) {
--
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