From 0ef7e18a1803e75046f8a71bb9179b90e092e95f Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Tue, 21 Sep 2010 09:57:26 -0400
Subject: [PATCH] linksBed assumes stdin.
---
src/linksBed/linksMain.cpp | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/src/linksBed/linksMain.cpp b/src/linksBed/linksMain.cpp
index 8f62dfc1..d3c0407d 100644
--- a/src/linksBed/linksMain.cpp
+++ b/src/linksBed/linksMain.cpp
@@ -30,16 +30,14 @@ int main(int argc, char* argv[]) {
bool showHelp = false;
// input files
- string bedFile;
- bool haveBed = false;
+ string bedFile = "stdin";
+ bool haveBed = true;
/* Defaults for everyone else */
string org = "human";
string db = "hg18";
string base = "http://genome.ucsc.edu";
- if(argc <= 1) showHelp = true;
-
for(int i = 1; i < argc; i++) {
int parameterLength = (int)strlen(argv[i]);
@@ -58,7 +56,6 @@ int main(int argc, char* argv[]) {
if(PARAMETER_CHECK("-i", 2, parameterLength)) {
if ((i+1) < argc) {
- haveBed = true;
bedFile = argv[i + 1];
i++;
}
--
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