From 09c74134c1a0cee5b2003041dfb0e626311a0ce6 Mon Sep 17 00:00:00 2001 From: Aaron <aaronquinlan@gmail.com> Date: Sun, 25 Jul 2010 18:04:06 -0400 Subject: [PATCH] Fixed bug in parsing lines that caused some GFF files to be detected as VCF. --- RELEASE_HISTORY | 6 ++++++ src/utils/version/version.h | 2 +- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/RELEASE_HISTORY b/RELEASE_HISTORY index 48e3fdeb..9bbc8a94 100644 --- a/RELEASE_HISTORY +++ b/RELEASE_HISTORY @@ -1,3 +1,9 @@ +Version 2.8.3 (July-25-2010) +1. Fixed bug that caused some GFF files to be misinterpreted as VCF. This prevented the detection of overlaps. +2. Added a new "-tag" option in bamToBed that allows one to choose the _numeric_ tag that will be used to populate the score field. For example, one could populate the score field with the alignment score with "-tag AS". +3. Updated the BamTools API. + + Version 2.8.2 (July-18-2010) 1. Fixed a bug in bedFile.h preventing GFF strands from being read properly. 2. Fixed a bug in intersectBed that occasionally caused spurious overlaps between BAM alignments and BED features. diff --git a/src/utils/version/version.h b/src/utils/version/version.h index cc6c1bbb..fdb8078f 100644 --- a/src/utils/version/version.h +++ b/src/utils/version/version.h @@ -3,6 +3,6 @@ // define the version. All tools in the // suite carry the same version number. -#define VERSION "2.8.2" +#define VERSION "2.8.3" #endif /* VERSION_H */ -- GitLab