diff --git a/.ci/.autoRedirect b/.ci/.autoRedirect
index a2eb11b6e14817671b50bcf2b5969815cce86a56..4e145579886f091e2665c8e3084619556e331933 100644
--- a/.ci/.autoRedirect
+++ b/.ci/.autoRedirect
@@ -14,7 +14,12 @@
}
});
}
- UrlExists('https://r3-core.pages.uni.lu/howto-cards-internal/index.html', function(status){
+
+ // define URLs
+ var internalURL = 'https://r3-core.pages.uni.lu/howto-cards-internal';
+ var externalURL = 'https://r3.pages.uni.lu/howto-cards';
+
+ UrlExists(internalURL+'/index.html', function(status){
var s = window.location.href;
var pathArray = s.split('?');
@@ -28,22 +33,38 @@
if(status === 200){
// internal pages
if (sub.length > 0) {
- UrlExists('https://r3-core.pages.uni.lu/howto-cards-internal/stable/internal/'+sub, function(status){
- // redirect if card is actually internal and exists
- if (status == 200) {
- window.location.href = 'https://r3-core.pages.uni.lu/howto-cards-internal/stable/internal/'+sub;
+ UrlExists(internalURL+'/stable/internal/'+sub, function(status){
+ if (status == 200) { // if sub-card is internal in the internal directory and exists
+ window.location.href = internalURL+'/stable/internal/'+sub;
} else {
- window.location.href = 'https://r3-core.pages.uni.lu/howto-cards-internal/stable/external/'+sub;
+ UrlExists(internalURL+'/stable/external/'+sub, function(status){
+ if (status == 200) { // if sub-card is internal in the external directory and exists
+ window.location.href = internalURL+'/stable/external/'+sub;
+ } else {
+ window.location.href = internalURL+'/404.html';
+ }
+ });
}
});
} else {
- window.location.href = 'https://r3-core.pages.uni.lu/howto-cards-internal/stable/'+sub;
+ UrlExists(internalURL+'/stable', function(status){
+ if (status == 200) { // if card is internal and exists
+ window.location.href = internalURL+'/stable';
+ } else {
+ window.location.href = internalURL+'/404.html';
+ }
+ });
}
-
+ // external pages
} else {
- // external pages
if (sub.length > 0) { sub = 'external/'+sub; }
- window.location.href = 'https://r3.pages.uni.lu/howto-cards/stable/'+sub;
+ UrlExists(externalURL+'/stable/'+sub, function(status){
+ if (status == 200) { // if sub-car is internal and exists
+ window.location.href = externalURL+'/stable/'+sub;
+ } else {
+ window.location.href = externalURL+'/404.html';
+ }
+ });
}
});
</script>
diff --git a/.ci/deploy.sh b/.ci/deploy.sh
index 2bbc4190cefb660ba07401e3f7f9f4ab7162d4ed..0726a1744c537fc962744c94a8b1b9c64c49a7c9 100644
--- a/.ci/deploy.sh
+++ b/.ci/deploy.sh
@@ -17,6 +17,11 @@ for branch in $(git for-each-ref --format='%(refname:strip=3)' refs/remotes); do
# build the website
bundle exec jekyll build --baseurl="howto-cards/$artefact" -d "public/$artefact"
+
+ if [[ $branch == "master" ]]; then
+ # set the 404
+ cp howto-cards/$artefact/404.html public/404.html
+ fi
done
# checkout the current branch
diff --git a/external/exchange-channels/duma.md b/external/exchange-channels/duma.md
index e1b44ad2674bd96bf60bf2b466a8a8539af13118..87e365b05a699b534e0906f5d87f62c9927e29fd 100644
--- a/external/exchange-channels/duma.md
+++ b/external/exchange-channels/duma.md
@@ -16,7 +16,7 @@ An access link can be reached via standard web browsers. Data can be transferred
* Through the web browser by visiting the link, which is our recommended way of data transfer, described in this [section of the guide](#ASPERAWEB_WEB)
* Through the use of a command line tool. If your data sits in an environment, where you can not launch a web browser, then you may use use a command line client tool to reach an access link. This process is described in this [section of this guide](#ASPERAWEB_CLI).
-The use of DUMA is mediated by LCSB's data stewards. If you require assistance in using DUMA, you should send an email to [LCSB admin team](mailto:lcsb-sysadmins@uni.lu).
+The use of DUMA is mediated by LCSB's data stewards. If you require assistance in using DUMA, you should send an email to the [LCSB datastewards](mailto:lcsb-datastewards@uni.lu).
<a name="ASPERAWEB_WEB"></a>
## Accessing AsperaWEB via Web Interface
diff --git a/external/git-clients/git-clients.md b/external/git-clients/git-clients.md
new file mode 100644
index 0000000000000000000000000000000000000000..f86b164a3d0b00063d0332990e90d988c59d241a
--- /dev/null
+++ b/external/git-clients/git-clients.md
@@ -0,0 +1,30 @@
+---
+layout: page
+permalink: /external/git-clients/
+---
+
+# Git clients
+
+## Installation of Git
+
+You can find installers for Windows, MacOS and Linux on the [Git webpage](https://git-scm.com/downloads).
+
+## GUI clients
+
+Here is a list of suggested Git GUI clients:
+
+* [Sourcetree](https://www.sourcetreeapp.com)
+* [Fork](https://git-fork.com)
+* [SmartGit](https://www.syntevo.com/smartgit/)
+
+You can find more clients on the [Git webpage](https://git-scm.com/downloads/guis).
+
+## IDEs
+
+There are also several IDEs (integrated development environments) that have git functionalities included:
+
+* [GitLab WebIDE](https://docs.gitlab.com/ee/user/project/web_ide/)
+* [Visual Studio Code](https://code.visualstudio.com/)
+* [Atom](https://atom.io/)
+* [IntelliJ](https://www.jetbrains.com/idea/)
+* [PyCharm](https://www.jetbrains.com/pycharm/)
diff --git a/index.md b/index.md
index 9e417eaba5b05fe3c01dbcd71366adc446f4f7ad..f16de6da14094b7d8ea268740c5f079c7ff75232 100644
--- a/index.md
+++ b/index.md
@@ -14,3 +14,4 @@ Bioinformatics Core assists Luxembourg Centre for Systems Biomedicine ([LCSB](ht
* [Registering human-subject data to DAISY](./external/daisy/)
* [Markdown markup language](./external/markdown/)
* [LUMS account](./external/lums-passwords)
+ * [Git clients](./external/git-clients/)