Issues · IMP / IMP3 · GitLab

IMPiris_VG: PathoFact/PlasFlow documentation

#1 · opened May 22, 2020 by Valentina Galata Include PathoFact and PlasFlow documentation
- CLOSED
- 1
updated May 26, 2020
IMPiris_VG: MultiQC single-sample summary report 5 of 5 tasks completed

#2 · opened May 22, 2020 by Valentina Galata Include MultiQC feature
- CLOSED
- 1
updated May 25, 2020
typo "trimmoed" in trimming rules for nextseq

#4 · opened May 25, 2020 by Valentina Galata bug
- CLOSED
- 5
updated Sep 30, 2020
IMPiris_VG: MultiQC documentation

#6 · opened May 25, 2020 by Valentina Galata Include MultiQC documentation
- CLOSED
- 0
updated May 26, 2020
Preprocessing: more efficient (de)compression

#7 · opened Jul 16, 2020 by Valentina Galata enhancement
- CLOSED
- 2
updated Nov 03, 2020
Config: bug in slurm.config.yaml

#8 · opened Jul 16, 2020 by Valentina Galata bug
- CLOSED
- 0
updated Oct 14, 2020
Conda: YAML for main venv

#10 · opened Jul 21, 2020 by Valentina Galata enhancement installation
- CLOSED
- 0
updated Dec 21, 2020
Assembly: merging/consensus: replace CAP3

#11 · opened Jul 22, 2020 by Valentina Galata Assembly enhancement
- 16
updated Mar 17, 2021
Read filtering: rm rRNA reads: replace sortmerna

#12 · opened Aug 17, 2020 by Valentina Galata discussion enhancement feature
- 1
- 3
updated Mar 04, 2021
Assembly: merging/consensus: compare options

#13 · opened Sep 10, 2020 by Valentina Galata Assembly test
- CLOSED
- 9
updated Nov 05, 2020
Assembly: add a flag to turn off assembly merging/consensus

#14 · opened Oct 12, 2020 by Valentina Galata Assembly enhancement feature
- CLOSED
- 1
updated Nov 04, 2020
MANTIS: setup and rules 4 of 5 tasks completed

#15 · opened Oct 15, 2020 by Valentina Galata MANTIS enhancement feature installation
- 2
updated Mar 26, 2021
Slurm: update config

#16 · opened Oct 30, 2020 by Valentina Galata Assembly update
- CLOSED
- 0
updated Dec 11, 2020
Launcher: add a launcher script

#17 · opened Oct 30, 2020 by Valentina Galata Assembly enhancement
- CLOSED
- 1
updated Nov 04, 2020
Docs: Trimmomatic adapters

#18 · opened Nov 11, 2020 by Valentina Galata documentation
- 0
updated Nov 11, 2020
Conda bug: "lib/R/etc/ldpaths: No such file or directory"

#19 · opened Nov 12, 2020 by Susheel Busi bug
- CLOSED
- 0
updated Nov 12, 2020
Config/init: do NOT get global variables from env

#20 · opened Dec 14, 2020 by Valentina Galata enhancement
- CLOSED
- 0
updated Dec 21, 2020
Preprocessing/trimming: cutadapt, nextseq

#21 · opened Feb 09, 2021 by Valentina Galata bug
- 1
updated Feb 09, 2021
Bug: missing prefix in ini/databases.smk

#22 · opened Feb 11, 2021 by Valentina Galata bug
- 0
updated Feb 11, 2021
PathoFact: include latest version

#23 · opened Mar 01, 2021 by Valentina Galata PathoFact feature update
- 1
updated Mar 01, 2021